Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
IFT140Q96RY7 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 MIR3667-201ENST00000581025 74 ntBASIC8.94□□□□□ -0.98
IFT140Q96RY7 CASC22-202ENST00000628396 802 ntTSL 5 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
IFT140Q96RY7 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 HNRNPA1P54-201ENST00000411857 9714 ntBASIC8.94□□□□□ -0.98
IFT140Q96RY7 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
IFT140Q96RY7 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC8.93□□□□□ -0.98
IFT140Q96RY7 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC8.93□□□□□ -0.98
IFT140Q96RY7 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 FAM3C2-201ENST00000312214 681 ntBASIC8.93□□□□□ -0.98
IFT140Q96RY7 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
IFT140Q96RY7 RPL10P10-201ENST00000403509 664 ntBASIC8.93□□□□□ -0.98
IFT140Q96RY7 AC007568.1-201ENST00000422912 471 ntBASIC8.93□□□□□ -0.98
IFT140Q96RY7 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 AC012512.1-201ENST00000446594 718 ntBASIC8.93□□□□□ -0.98
IFT140Q96RY7 AC063943.1-201ENST00000465434 453 ntBASIC8.93□□□□□ -0.98
IFT140Q96RY7 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC8.93□□□□□ -0.98
IFT140Q96RY7 AC079080.1-201ENST00000479841 822 ntBASIC8.93□□□□□ -0.98
IFT140Q96RY7 TOMM22P4-201ENST00000511318 336 ntBASIC8.93□□□□□ -0.98
IFT140Q96RY7 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC8.93□□□□□ -0.98
IFT140Q96RY7 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC8.93□□□□□ -0.98
IFT140Q96RY7 RN7SL356P-201ENST00000582228 248 ntBASIC8.93□□□□□ -0.98
IFT140Q96RY7 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC8.93□□□□□ -0.98
IFT140Q96RY7 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
IFT140Q96RY7 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 AC091046.3-201ENST00000631455 1574 ntBASIC8.92□□□□□ -0.98
IFT140Q96RY7 AC013268.3-201ENST00000262716 2324 ntBASIC8.92□□□□□ -0.98
IFT140Q96RY7 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
IFT140Q96RY7 RNA5SP428-201ENST00000365129 132 ntBASIC8.92□□□□□ -0.98
IFT140Q96RY7 AC004690.1-201ENST00000418216 328 ntBASIC8.92□□□□□ -0.98
IFT140Q96RY7 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 AP002981.1-201ENST00000517692 975 ntBASIC8.92□□□□□ -0.98
IFT140Q96RY7 GTF2IP11-201ENST00000526931 420 ntBASIC8.92□□□□□ -0.98
IFT140Q96RY7 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 PARP1P2-201ENST00000556806 195 ntBASIC8.92□□□□□ -0.98
IFT140Q96RY7 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 AC011453.2-201ENST00000603737 729 ntBASIC8.92□□□□□ -0.98
IFT140Q96RY7 AL391358.1-201ENST00000605342 190 ntBASIC8.92□□□□□ -0.98
IFT140Q96RY7 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
IFT140Q96RY7 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
IFT140Q96RY7 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
IFT140Q96RY7 AC006600.2-201ENST00000624834 2506 ntBASIC8.92□□□□□ -0.98
IFT140Q96RY7 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
IFT140Q96RY7 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 USP8-204ENST00000425032 3559 ntTSL 2 BASIC8.92□□□□□ -0.98
IFT140Q96RY7 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
IFT140Q96RY7 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC8.91□□□□□ -0.98
IFT140Q96RY7 RPS4XP16-201ENST00000427198 791 ntBASIC8.91□□□□□ -0.98
IFT140Q96RY7 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC8.91□□□□□ -0.98
IFT140Q96RY7 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC8.91□□□□□ -0.98
IFT140Q96RY7 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC8.91□□□□□ -0.98
IFT140Q96RY7 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC8.91□□□□□ -0.98
IFT140Q96RY7 AC068522.1-201ENST00000482895 345 ntBASIC8.91□□□□□ -0.98
IFT140Q96RY7 AC140172.1-201ENST00000502928 141 ntBASIC8.91□□□□□ -0.98
IFT140Q96RY7 RN7SKP122-201ENST00000515923 296 ntBASIC8.91□□□□□ -0.98
IFT140Q96RY7 AC078899.1-201ENST00000521432 1185 ntBASIC8.91□□□□□ -0.98
IFT140Q96RY7 GCSHP4-201ENST00000538792 439 ntBASIC8.91□□□□□ -0.98
IFT140Q96RY7 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC8.91□□□□□ -0.98
IFT140Q96RY7 HIRAP1-201ENST00000605318 787 ntBASIC8.91□□□□□ -0.98
IFT140Q96RY7 AC004836.1-201ENST00000623032 634 ntBASIC8.91□□□□□ -0.98
IFT140Q96RY7 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC8.91□□□□□ -0.98
IFT140Q96RY7 AL359195.2-201ENST00000623657 4412 ntBASIC8.91□□□□□ -0.98
IFT140Q96RY7 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
IFT140Q96RY7 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
IFT140Q96RY7 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC8.91□□□□□ -0.98
IFT140Q96RY7 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
IFT140Q96RY7 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
IFT140Q96RY7 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
IFT140Q96RY7 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC8.9□□□□□ -0.98
IFT140Q96RY7 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
IFT140Q96RY7 FHIT-201ENST00000341848 174 ntTSL 3 BASIC8.9□□□□□ -0.98
IFT140Q96RY7 RNA5SP113-201ENST00000410486 84 ntBASIC8.9□□□□□ -0.98
IFT140Q96RY7 RN7SKP100-201ENST00000411258 284 ntBASIC8.9□□□□□ -0.98
IFT140Q96RY7 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC8.9□□□□□ -0.98
IFT140Q96RY7 RN7SL423P-201ENST00000486202 304 ntBASIC8.9□□□□□ -0.98
IFT140Q96RY7 RN7SL690P-201ENST00000582087 240 ntBASIC8.9□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms