Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 AL360270.2-201ENST00000562952 5985 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 SMG1P4-204ENST00000523028 4131 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 HSPD1P9-201ENST00000420325 1636 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 COX6B1P3-201ENST00000312310 260 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 RN7SKP275-201ENST00000364626 301 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 SNORA48.4-201ENST00000391089 134 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC211486.3-201ENST00000412694 621 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC110602.1-201ENST00000437414 318 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AP000797.2-201ENST00000475768 606 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 PRMT5P1-201ENST00000514351 598 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 OR5AM1P-201ENST00000532136 1032 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 MIR4701-201ENST00000583094 63 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC092681.3-201ENST00000609463 678 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AL365181.4-201ENST00000609800 547 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 AC091932.2-201ENST00000623014 291 ntBASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC112Q8NEF3 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
CCDC112Q8NEF3 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC112Q8NEF3 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC112Q8NEF3 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC6.15□□□□□ -1.43
CCDC112Q8NEF3 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC6.15□□□□□ -1.43
CCDC112Q8NEF3 AC027088.4-201ENST00000611559 1947 ntBASIC6.15□□□□□ -1.43
CCDC112Q8NEF3 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
CCDC112Q8NEF3 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC112Q8NEF3 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC112Q8NEF3 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC112Q8NEF3 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 Z95331.1-201ENST00000623075 23112 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 AC023490.2-201ENST00000359859 470 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 AC004386.1-201ENST00000393214 761 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 NPM1P40-201ENST00000412758 733 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 AL035422.1-201ENST00000414193 397 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 RPS4XP12-201ENST00000461747 709 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 UBFD1P1-201ENST00000473259 814 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 AC021106.1-201ENST00000509020 1058 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 AC091912.1-201ENST00000511351 248 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 AC067773.1-201ENST00000603284 1094 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 AC091167.5-201ENST00000605689 894 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 uc_338.7-201ENST00000621834 124 ntBASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC112Q8NEF3 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC112Q8NEF3 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms