Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 KCTD9P4-201ENST00000526766 1166 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.39□□□□□ -1.39
USP39Q53GS9 AC007956.1-201ENST00000555623 542 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC6.39□□□□□ -1.39
USP39Q53GS9 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC6.39□□□□□ -1.39
USP39Q53GS9 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.39□□□□□ -1.39
USP39Q53GS9 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC6.39□□□□□ -1.39
USP39Q53GS9 AC097467.4-201ENST00000605504 141 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.39□□□□□ -1.39
USP39Q53GS9 AC026367.3-201ENST00000619032 590 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 AC241377.1-201ENST00000619797 406 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 MIR6886-201ENST00000619864 61 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 AL031667.3-201ENST00000620124 655 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 AC127024.6-201ENST00000621598 424 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.39□□□□□ -1.39
USP39Q53GS9 MAPK10-287ENST00000641217 3037 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 AC140479.2-201ENST00000421567 3130 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 MTND4P8-201ENST00000514997 1362 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.39□□□□□ -1.39
USP39Q53GS9 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.39□□□□□ -1.39
USP39Q53GS9 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 CDY11P-201ENST00000447168 1651 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.39□□□□□ -1.39
USP39Q53GS9 CCAT2-201ENST00000630920 1752 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 MIR130B-202ENST00000385018 82 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 RNU6-648P-201ENST00000410190 107 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 Y_RNA.599-201ENST00000410489 109 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC130360.1-201ENST00000425489 1117 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC013262.1-201ENST00000426710 252 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 USP9YP11-201ENST00000427537 717 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC073648.4-201ENST00000442655 781 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC6.38□□□□□ -1.39
USP39Q53GS9 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 MTCYBP14-201ENST00000457471 715 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC007998.1-201ENST00000474156 672 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 RN7SL714P-201ENST00000487050 298 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC6.38□□□□□ -1.39
USP39Q53GS9 MTND4LP2-201ENST00000502312 285 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC069306.1-201ENST00000507006 843 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 RN7SKP238-201ENST00000516483 249 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC134698.4-201ENST00000523451 826 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC130365.2-201ENST00000525882 1201 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC118942.1-201ENST00000529674 1035 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AGGF1P7-201ENST00000562369 913 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC023825.1-201ENST00000566704 1030 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AGGF1P6-201ENST00000569213 976 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.38□□□□□ -1.39
USP39Q53GS9 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 STARD6-202ENST00000577499 696 ntTSL 2 BASIC6.38□□□□□ -1.39
USP39Q53GS9 RN7SL475P-201ENST00000583379 298 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC6.38□□□□□ -1.39
USP39Q53GS9 TEX41-218ENST00000596540 882 ntTSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC021171.1-201ENST00000603137 706 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC012213.4-201ENST00000606457 354 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC010998.3-201ENST00000613871 631 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC245014.3-201ENST00000618589 347 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC018659.2-201ENST00000624690 715 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 MIR3974-201ENST00000637126 96 ntBASIC6.38□□□□□ -1.39
USP39Q53GS9 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
USP39Q53GS9 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.38□□□□□ -1.39
USP39Q53GS9 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 AC005332.9-201ENST00000620266 2921 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms