Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 RN7SL326P-201ENST00000477493 296 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 RN7SL30P-201ENST00000488416 306 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AL671862.1-201ENST00000515851 349 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 RNU6-491P-201ENST00000516099 110 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 SNORA70.20-201ENST00000516848 126 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC074029.2-201ENST00000551045 634 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 LINC00557-201ENST00000563184 1279 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC007423.1-201ENST00000605009 627 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AL136370.1-201ENST00000608166 691 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AL008723.3-201ENST00000608926 449 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 MIR6809-201ENST00000612189 116 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC024255.1-201ENST00000614376 102 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC090510.2-201ENST00000617465 629 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AL133243.2-201ENST00000610331 1621 ntBASIC5.81□□□□□ -1.48
COL28A1Q2UY09 AC119674.1-213ENST00000641177 1386 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC015799.1-201ENST00000622996 3122 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC140134.1-201ENST00000511830 3544 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 RNA5SP478-201ENST00000364657 115 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 MIR1286-201ENST00000408112 78 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 RNA5SP156-201ENST00000410250 110 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 RN7SKP121-201ENST00000410842 305 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 SEPT7P8-201ENST00000413308 775 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 RPL31P20-201ENST00000449593 360 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 RPL35AP28-201ENST00000459730 331 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AL672167.3-201ENST00000465951 960 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC004453.1-201ENST00000487895 408 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 RN7SL184P-201ENST00000488308 297 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 NPM1P21-201ENST00000513394 762 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 RNU6-319P-201ENST00000516025 108 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC009120.3-201ENST00000563335 499 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC092474.3-201ENST00000603022 568 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 IMMP1LP3-201ENST00000604197 224 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AL445670.1-201ENST00000618889 801 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL28A1Q2UY09 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 AC114876.1-201ENST00000490962 1366 ntBASIC5.8□□□□□ -1.48
COL28A1Q2UY09 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
COL28A1Q2UY09 RNU4-39P-201ENST00000362455 127 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 RNA5SP507-201ENST00000363603 121 ntBASIC5.79□□□□□ -1.48
COL28A1Q2UY09 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms