Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 SLC2A3P4-201ENST00000521259 1471 ntBASIC6.53□□□□□ -1.36
RNF4P78317 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.53□□□□□ -1.36
RNF4P78317 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.53□□□□□ -1.36
RNF4P78317 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
RNF4P78317 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC6.53□□□□□ -1.36
RNF4P78317 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 ENSAP3-201ENST00000312710 333 ntBASIC6.53□□□□□ -1.36
RNF4P78317 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 U3.28-201ENST00000391249 210 ntBASIC6.53□□□□□ -1.36
RNF4P78317 RPL5P5-201ENST00000392009 893 ntBASIC6.53□□□□□ -1.36
RNF4P78317 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 MRPL32P1-201ENST00000406301 247 ntBASIC6.53□□□□□ -1.36
RNF4P78317 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 RNA5SP80-201ENST00000410475 111 ntBASIC6.53□□□□□ -1.36
RNF4P78317 RN7SKP268-201ENST00000411107 316 ntBASIC6.53□□□□□ -1.36
RNF4P78317 TPMTP3-201ENST00000411928 735 ntBASIC6.53□□□□□ -1.36
RNF4P78317 AC244452.1-201ENST00000413798 141 ntBASIC6.53□□□□□ -1.36
RNF4P78317 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC6.53□□□□□ -1.36
RNF4P78317 CDK8P2-201ENST00000415020 547 ntBASIC6.53□□□□□ -1.36
RNF4P78317 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC6.53□□□□□ -1.36
RNF4P78317 RPL5P34-201ENST00000426545 891 ntBASIC6.53□□□□□ -1.36
RNF4P78317 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC6.53□□□□□ -1.36
RNF4P78317 AL604028.2-201ENST00000437848 788 ntBASIC6.53□□□□□ -1.36
RNF4P78317 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC6.53□□□□□ -1.36
RNF4P78317 AC027124.1-201ENST00000440852 466 ntBASIC6.53□□□□□ -1.36
RNF4P78317 MTND1P30-201ENST00000441241 901 ntBASIC6.53□□□□□ -1.36
RNF4P78317 COX6CP2-201ENST00000444980 225 ntBASIC6.53□□□□□ -1.36
RNF4P78317 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.53□□□□□ -1.36
RNF4P78317 IGBP1P3-201ENST00000447449 1000 ntBASIC6.53□□□□□ -1.36
RNF4P78317 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC6.53□□□□□ -1.36
RNF4P78317 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC6.53□□□□□ -1.36
RNF4P78317 RBMY2EP-202ENST00000456360 940 ntBASIC6.53□□□□□ -1.36
RNF4P78317 TREML3P-201ENST00000457327 501 ntBASIC6.53□□□□□ -1.36
RNF4P78317 RPL9P33-201ENST00000484311 566 ntBASIC6.53□□□□□ -1.36
RNF4P78317 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC6.53□□□□□ -1.36
RNF4P78317 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC6.53□□□□□ -1.36
RNF4P78317 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC6.53□□□□□ -1.36
RNF4P78317 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC6.53□□□□□ -1.36
RNF4P78317 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC6.53□□□□□ -1.36
RNF4P78317 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC6.53□□□□□ -1.36
RNF4P78317 AC016957.1-201ENST00000534895 309 ntBASIC6.53□□□□□ -1.36
RNF4P78317 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC6.53□□□□□ -1.36
RNF4P78317 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC6.53□□□□□ -1.36
RNF4P78317 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC6.53□□□□□ -1.36
RNF4P78317 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC6.53□□□□□ -1.36
RNF4P78317 AC068135.2-201ENST00000569293 1028 ntBASIC6.53□□□□□ -1.36
RNF4P78317 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 EIF4A3P1-201ENST00000578499 647 ntBASIC6.53□□□□□ -1.36
RNF4P78317 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC6.53□□□□□ -1.36
RNF4P78317 RN7SL426P-201ENST00000579106 295 ntBASIC6.53□□□□□ -1.36
RNF4P78317 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 MIR5682-201ENST00000584864 76 ntBASIC6.53□□□□□ -1.36
RNF4P78317 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 AC090186.1-201ENST00000605991 572 ntBASIC6.53□□□□□ -1.36
RNF4P78317 CASC19-232ENST00000641480 1244 ntBASIC6.53□□□□□ -1.36
RNF4P78317 AL121949.2-201ENST00000403446 1548 ntBASIC6.53□□□□□ -1.36
RNF4P78317 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC6.53□□□□□ -1.36
RNF4P78317 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
RNF4P78317 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
RNF4P78317 CASC19-248ENST00000641674 1356 ntBASIC6.53□□□□□ -1.36
RNF4P78317 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC6.53□□□□□ -1.36
RNF4P78317 AC005539.1-201ENST00000443768 1479 ntBASIC6.53□□□□□ -1.36
RNF4P78317 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
RNF4P78317 AC034111.1-201ENST00000562143 3770 ntBASIC6.53□□□□□ -1.36
RNF4P78317 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC6.53□□□□□ -1.36
RNF4P78317 AC011477.1-204ENST00000623416 1325 ntBASIC6.52□□□□□ -1.37
RNF4P78317 SEC63P2-201ENST00000503863 1939 ntBASIC6.52□□□□□ -1.37
RNF4P78317 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
RNF4P78317 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC6.52□□□□□ -1.37
RNF4P78317 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms