Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC7.02□□□□□ -1.28
COL18A1P39060 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC7.02□□□□□ -1.29
COL18A1P39060 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL18A1P39060 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL18A1P39060 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL18A1P39060 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL18A1P39060 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL18A1P39060 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL18A1P39060 RNU1-32P-201ENST00000363937 159 ntBASIC7.02□□□□□ -1.29
COL18A1P39060 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC7.02□□□□□ -1.29
COL18A1P39060 OR2AM1P-201ENST00000422137 422 ntBASIC7.02□□□□□ -1.29
COL18A1P39060 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC7.02□□□□□ -1.29
COL18A1P39060 PRELID3BP5-201ENST00000508612 460 ntBASIC7.02□□□□□ -1.29
COL18A1P39060 AC087360.1-201ENST00000518788 616 ntBASIC7.02□□□□□ -1.29
COL18A1P39060 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC7.02□□□□□ -1.29
COL18A1P39060 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL18A1P39060 AC008814.1-201ENST00000603797 406 ntBASIC7.02□□□□□ -1.29
COL18A1P39060 AP005131.7-201ENST00000610087 611 ntBASIC7.02□□□□□ -1.29
COL18A1P39060 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC7.02□□□□□ -1.29
COL18A1P39060 NEK3-211ENST00000629912 141 ntTSL 5 BASIC7.02□□□□□ -1.29
COL18A1P39060 AC073869.8-201ENST00000641806 335 ntBASIC7.02□□□□□ -1.29
COL18A1P39060 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC7.02□□□□□ -1.29
COL18A1P39060 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
COL18A1P39060 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL18A1P39060 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL18A1P39060 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL18A1P39060 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
COL18A1P39060 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL18A1P39060 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL18A1P39060 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL18A1P39060 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL18A1P39060 RPL23AP17-201ENST00000401064 499 ntBASIC7.01□□□□□ -1.29
COL18A1P39060 RPL10P10-201ENST00000403509 664 ntBASIC7.01□□□□□ -1.29
COL18A1P39060 RPL7P56-201ENST00000429441 717 ntBASIC7.01□□□□□ -1.29
COL18A1P39060 ZDHHC20P1-204ENST00000435787 423 ntBASIC7.01□□□□□ -1.29
COL18A1P39060 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC7.01□□□□□ -1.29
COL18A1P39060 AL590399.4-201ENST00000436561 601 ntBASIC7.01□□□□□ -1.29
COL18A1P39060 AC091912.1-201ENST00000511351 248 ntBASIC7.01□□□□□ -1.29
COL18A1P39060 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC7.01□□□□□ -1.29
COL18A1P39060 UBE2FP2-201ENST00000566646 462 ntBASIC7.01□□□□□ -1.29
COL18A1P39060 MIR4270-201ENST00000581799 70 ntBASIC7.01□□□□□ -1.29
COL18A1P39060 AC005252.1-201ENST00000604518 1063 ntBASIC7.01□□□□□ -1.29
COL18A1P39060 AC010435.1-201ENST00000623353 1177 ntBASIC7.01□□□□□ -1.29
COL18A1P39060 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL18A1P39060 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC7.01□□□□□ -1.29
COL18A1P39060 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC7.01□□□□□ -1.29
COL18A1P39060 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL18A1P39060 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC7.01□□□□□ -1.29
COL18A1P39060 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL18A1P39060 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL18A1P39060 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC7□□□□□ -1.29
COL18A1P39060 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC7□□□□□ -1.29
COL18A1P39060 AC010132.2-201ENST00000295493 1043 ntBASIC7□□□□□ -1.29
COL18A1P39060 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC7□□□□□ -1.29
COL18A1P39060 RNU1-59P-201ENST00000364829 162 ntBASIC7□□□□□ -1.29
COL18A1P39060 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC7□□□□□ -1.29
COL18A1P39060 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC7□□□□□ -1.29
COL18A1P39060 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC7□□□□□ -1.29
COL18A1P39060 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC7□□□□□ -1.29
COL18A1P39060 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC7□□□□□ -1.29
COL18A1P39060 GAPDHP62-201ENST00000515313 990 ntBASIC7□□□□□ -1.29
COL18A1P39060 AL359715.3-201ENST00000569267 2123 ntBASIC7□□□□□ -1.29
COL18A1P39060 MIR5096-201ENST00000583713 70 ntBASIC7□□□□□ -1.29
COL18A1P39060 U1.25-201ENST00000614085 162 ntBASIC7□□□□□ -1.29
COL18A1P39060 U1.34-201ENST00000618578 162 ntBASIC7□□□□□ -1.29
COL18A1P39060 U1.31-201ENST00000620022 160 ntBASIC7□□□□□ -1.29
COL18A1P39060 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC7□□□□□ -1.29
COL18A1P39060 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC7□□□□□ -1.29
COL18A1P39060 AC068769.1-201ENST00000474767 2426 ntBASIC7□□□□□ -1.29
COL18A1P39060 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC7□□□□□ -1.29
COL18A1P39060 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC7□□□□□ -1.29
COL18A1P39060 AC100757.1-201ENST00000616872 1835 ntBASIC7□□□□□ -1.29
COL18A1P39060 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
COL18A1P39060 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
COL18A1P39060 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC7□□□□□ -1.29
COL18A1P39060 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
COL18A1P39060 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 RPS26P38-201ENST00000414476 348 ntBASIC7□□□□□ -1.29
COL18A1P39060 GJA6P-201ENST00000415117 1042 ntBASIC7□□□□□ -1.29
COL18A1P39060 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC7□□□□□ -1.29
COL18A1P39060 AL390879.1-201ENST00000439143 386 ntBASIC7□□□□□ -1.29
COL18A1P39060 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC7□□□□□ -1.29
COL18A1P39060 RNA5SP43-201ENST00000516559 110 ntBASIC7□□□□□ -1.29
COL18A1P39060 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC7□□□□□ -1.29
COL18A1P39060 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC7□□□□□ -1.29
COL18A1P39060 AC244107.2-201ENST00000611773 76 ntBASIC7□□□□□ -1.29
COL18A1P39060 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
COL18A1P39060 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms