Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SPTLC1P2-201ENST00000407089 121 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 OR51B3P-201ENST00000412287 913 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 MTCYBP7-201ENST00000419540 1134 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC6.92□□□□□ -1.3
COL6A1P12109 MTND4P24-201ENST00000424002 397 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 BX119904.4-201ENST00000424402 301 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 RPS6P15-201ENST00000431996 751 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 AC096638.2-201ENST00000434965 711 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 GAPDHP58-201ENST00000438477 1006 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 AL513321.1-201ENST00000441175 761 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 TRIM60P16-201ENST00000444048 694 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 OR6K5P-201ENST00000447050 945 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC6.92□□□□□ -1.3
COL6A1P12109 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.92□□□□□ -1.3
COL6A1P12109 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC6.92□□□□□ -1.3
COL6A1P12109 RN7SL466P-201ENST00000497546 295 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC6.92□□□□□ -1.3
COL6A1P12109 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 RNU5A-7P-201ENST00000515979 116 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 RNU6-319P-201ENST00000516025 108 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC6.92□□□□□ -1.3
COL6A1P12109 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC6.92□□□□□ -1.3
COL6A1P12109 AL132857.1-201ENST00000555180 708 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 AL390726.5-202ENST00000564800 256 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC6.92□□□□□ -1.3
COL6A1P12109 RNU6-1192P-201ENST00000612197 107 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 AC022106.1-201ENST00000612834 766 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 AC090116.1-201ENST00000615679 446 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 RNU6-489P-201ENST00000618289 107 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 MRPL57P1-201ENST00000621486 265 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 AL512506.2-201ENST00000624472 458 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 OR8G3P-202ENST00000641572 1255 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC6.92□□□□□ -1.3
COL6A1P12109 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.92□□□□□ -1.3
COL6A1P12109 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC6.92□□□□□ -1.3
COL6A1P12109 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.92□□□□□ -1.3
COL6A1P12109 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.92□□□□□ -1.3
COL6A1P12109 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC6.92□□□□□ -1.3
COL6A1P12109 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL6A1P12109 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.91□□□□□ -1.3
COL6A1P12109 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.91□□□□□ -1.3
COL6A1P12109 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 AL596244.1-201ENST00000567068 3779 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC6.91□□□□□ -1.3
COL6A1P12109 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 AC022325.1-201ENST00000502748 2199 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
COL6A1P12109 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 RNU5E-10P-201ENST00000363506 118 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 RN7SKP162-201ENST00000363605 345 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 SNORA74A-201ENST00000364089 198 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 CD2-201ENST00000369477 478 ntTSL 2 BASIC6.91□□□□□ -1.3
COL6A1P12109 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 RNA5SP156-201ENST00000410250 110 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
COL6A1P12109 RPL35AP31-201ENST00000418340 337 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.91□□□□□ -1.3
COL6A1P12109 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC6.91□□□□□ -1.3
COL6A1P12109 TXNL1P1-201ENST00000429528 554 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.91□□□□□ -1.3
COL6A1P12109 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
COL6A1P12109 ARAFP2-201ENST00000440565 559 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC6.91□□□□□ -1.3
COL6A1P12109 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC6.91□□□□□ -1.3
COL6A1P12109 OR9N1P-201ENST00000491296 333 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.91□□□□□ -1.3
COL6A1P12109 CYCSP22-201ENST00000517555 339 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC6.91□□□□□ -1.3
COL6A1P12109 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC6.91□□□□□ -1.3
COL6A1P12109 AC005000.1-201ENST00000536192 288 ntBASIC6.91□□□□□ -1.3
COL6A1P12109 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC6.91□□□□□ -1.3
COL6A1P12109 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.91□□□□□ -1.3
COL6A1P12109 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.91□□□□□ -1.3
COL6A1P12109 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.91□□□□□ -1.3
COL6A1P12109 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL6A1P12109 AC002487.1-201ENST00000604565 994 ntBASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms