Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 RIMKLBP2-201ENST00000424737 654 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AC115283.1-201ENST00000427353 400 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 AL359839.1-201ENST00000451975 1160 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AZGP1P2-201ENST00000454506 345 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AC073610.1-201ENST00000489971 396 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 RPL37P23-201ENST00000492641 294 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AC009120.1-201ENST00000493458 473 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 NENFP3-201ENST00000503735 313 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 DUTP7-201ENST00000507982 486 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 RNA5SP473-201ENST00000516402 125 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 SNORA70.20-201ENST00000516848 126 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AC060775.1-201ENST00000518241 520 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AC138832.1-201ENST00000522871 556 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AP000648.1-201ENST00000529682 397 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 TOMM20P1-201ENST00000534518 427 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC4.67□□□□□ -1.66
SDCBPO00560 AC068305.2-201ENST00000550567 1205 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 RN7SL290P-201ENST00000578661 300 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC4.67□□□□□ -1.66
SDCBPO00560 AC067773.1-201ENST00000603284 1094 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AL031601.1-201ENST00000605702 394 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AL390318.1-201ENST00000624564 687 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AC022919.1-201ENST00000624979 626 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
SDCBPO00560 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 AC003973.3-201ENST00000624863 2822 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SDCBPO00560 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.66□□□□□ -1.66
SDCBPO00560 AC083899.1-201ENST00000454465 3819 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC4.66□□□□□ -1.66
SDCBPO00560 GAPDHP24-201ENST00000328713 983 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.66□□□□□ -1.66
SDCBPO00560 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SDCBPO00560 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SDCBPO00560 SNORD56.6-201ENST00000384569 71 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 RNA5SP241-201ENST00000391326 114 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 LSM5-203ENST00000409782 649 ntTSL 5 BASIC4.66□□□□□ -1.66
SDCBPO00560 RMRPP5-201ENST00000411156 267 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.66□□□□□ -1.66
SDCBPO00560 AC245060.4-201ENST00000413293 1121 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AC066692.1-201ENST00000421721 457 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 SETP9-201ENST00000423837 832 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AL022331.1-201ENST00000429025 477 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC4.66□□□□□ -1.66
SDCBPO00560 HMGB3P24-201ENST00000433260 622 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 RPS10P18-201ENST00000442662 495 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 PPIA-203ENST00000451562 544 ntTSL 2 BASIC4.66□□□□□ -1.66
SDCBPO00560 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC4.66□□□□□ -1.66
SDCBPO00560 HLA-DPA3-207ENST00000454398 229 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 RN7SL741P-201ENST00000482473 289 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AC026782.2-201ENST00000510845 636 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AC092709.1-201ENST00000521355 1045 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.66□□□□□ -1.66
SDCBPO00560 MAL2-207ENST00000522828 603 ntTSL 3 BASIC4.66□□□□□ -1.66
SDCBPO00560 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC4.66□□□□□ -1.66
SDCBPO00560 AC024405.1-201ENST00000532521 1042 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC4.66□□□□□ -1.66
SDCBPO00560 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.66□□□□□ -1.66
SDCBPO00560 MIR4311-201ENST00000580794 100 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 MIR4660-201ENST00000583549 74 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SDCBPO00560 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SDCBPO00560 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC4.66□□□□□ -1.66
SDCBPO00560 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC4.66□□□□□ -1.66
SDCBPO00560 AL138895.2-201ENST00000603019 178 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.66□□□□□ -1.66
SDCBPO00560 FO681491.1-202ENST00000623392 737 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.66□□□□□ -1.66
SDCBPO00560 5S_rRNA.28-201ENST00000638107 119 ntBASIC4.66□□□□□ -1.66
SDCBPO00560 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SDCBPO00560 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC4.66□□□□□ -1.66
SDCBPO00560 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.66□□□□□ -1.66
SDCBPO00560 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SDCBPO00560 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SDCBPO00560 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SDCBPO00560 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC4.66□□□□□ -1.66
SDCBPO00560 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SDCBPO00560 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC4.66□□□□□ -1.66
SDCBPO00560 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SDCBPO00560 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
SDCBPO00560 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.66
SDCBPO00560 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
SDCBPO00560 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SDCBPO00560 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SDCBPO00560 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
SDCBPO00560 RNU1-150P-201ENST00000362491 162 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 193.3 ms