Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC097721.1-201ENST00000427150 1253 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC092106.2-201ENST00000436597 487 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 RPL12P49-201ENST00000441100 121 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC068135.1-201ENST00000446164 246 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC010468.1-201ENST00000461022 817 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 MTHFD2P4-201ENST00000515074 1025 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 SNORA81.2-201ENST00000516868 170 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 MTCO1P47-201ENST00000523889 1271 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC027104.1-201ENST00000563702 681 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 MIR3157-201ENST00000578688 85 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC244100.4-201ENST00000617747 388 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AL121594.5-201ENST00000631724 573 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC007603.3-201ENST00000636915 979 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 MTND4P10-201ENST00000446199 1363 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 AC107021.2-201ENST00000567714 2095 ntBASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.53□□□□□ -1.36
TRIM39Q9HCM9 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
TRIM39Q9HCM9 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC074141.1-201ENST00000588129 2995 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC104454.1-201ENST00000421341 1401 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 UGT2B26P-201ENST00000508672 1613 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 RNU6-666P-201ENST00000363499 107 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 VIM2P-201ENST00000402383 1294 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AL713922.1-201ENST00000416477 747 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AL356320.2-201ENST00000417263 507 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 RPL23AP85-201ENST00000421838 433 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 RPL23AP4-201ENST00000427757 463 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 UBE2V1P1-201ENST00000430836 445 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AL645939.3-201ENST00000435408 225 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 RPS18P1-201ENST00000447840 458 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 RSL24D1P3-201ENST00000449255 495 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 MRPL35P4-201ENST00000453682 566 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 RN7SL413P-201ENST00000482700 297 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC093870.1-201ENST00000506837 213 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC083906.1-201ENST00000509298 406 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 RNU6-1004P-201ENST00000516584 111 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC023813.2-201ENST00000564321 469 ntBASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
TRIM39Q9HCM9 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms