Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
IFT140Q96RY7 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.97
IFT140Q96RY7 RNA5SP455-201ENST00000365190 119 ntBASIC8.96□□□□□ -0.97
IFT140Q96RY7 DBIP1-201ENST00000401435 260 ntBASIC8.96□□□□□ -0.97
IFT140Q96RY7 RPSAP35-201ENST00000413753 818 ntBASIC8.96□□□□□ -0.97
IFT140Q96RY7 NUTF2P7-201ENST00000453086 375 ntBASIC8.96□□□□□ -0.97
IFT140Q96RY7 OSTCP1-201ENST00000455507 450 ntBASIC8.96□□□□□ -0.97
IFT140Q96RY7 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC8.96□□□□□ -0.97
IFT140Q96RY7 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.97
IFT140Q96RY7 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.97
IFT140Q96RY7 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
IFT140Q96RY7 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
IFT140Q96RY7 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC8.96□□□□□ -0.97
IFT140Q96RY7 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC8.96□□□□□ -0.97
IFT140Q96RY7 AC091042.1-201ENST00000579213 173 ntBASIC8.96□□□□□ -0.97
IFT140Q96RY7 AP005403.1-201ENST00000579720 229 ntBASIC8.96□□□□□ -0.97
IFT140Q96RY7 MEMO1P5-201ENST00000604810 406 ntBASIC8.96□□□□□ -0.97
IFT140Q96RY7 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC8.96□□□□□ -0.97
IFT140Q96RY7 JPX-212ENST00000639185 9658 ntTSL 5 BASIC8.96□□□□□ -0.97
IFT140Q96RY7 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC8.96□□□□□ -0.97
IFT140Q96RY7 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
IFT140Q96RY7 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.98
IFT140Q96RY7 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC8.96□□□□□ -0.98
IFT140Q96RY7 CCDC162P-202ENST00000368966 6751 ntBASIC8.96□□□□□ -0.98
IFT140Q96RY7 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
IFT140Q96RY7 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
IFT140Q96RY7 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
IFT140Q96RY7 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
IFT140Q96RY7 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 RNA5SP326-201ENST00000363209 110 ntBASIC8.96□□□□□ -0.98
IFT140Q96RY7 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 RPL34P20-201ENST00000442771 351 ntBASIC8.96□□□□□ -0.98
IFT140Q96RY7 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 TRBV5-2-201ENST00000489095 273 ntBASIC8.96□□□□□ -0.98
IFT140Q96RY7 AC024451.1-201ENST00000508013 779 ntBASIC8.96□□□□□ -0.98
IFT140Q96RY7 RN7SKP21-201ENST00000516503 220 ntBASIC8.96□□□□□ -0.98
IFT140Q96RY7 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 MYLK-221ENST00000583087 678 ntTSL 4 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 AC137695.1-201ENST00000604126 489 ntBASIC8.96□□□□□ -0.98
IFT140Q96RY7 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC8.96□□□□□ -0.98
IFT140Q96RY7 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 RNA5SP332-201ENST00000391063 115 ntBASIC8.95□□□□□ -0.98
IFT140Q96RY7 AL049693.1-201ENST00000402760 611 ntBASIC8.95□□□□□ -0.98
IFT140Q96RY7 RNF10P1-201ENST00000418589 369 ntBASIC8.95□□□□□ -0.98
IFT140Q96RY7 CNOT7P1-201ENST00000429006 852 ntBASIC8.95□□□□□ -0.98
IFT140Q96RY7 AC068287.1-201ENST00000430283 295 ntBASIC8.95□□□□□ -0.98
IFT140Q96RY7 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 RN7SKP253-201ENST00000516424 309 ntBASIC8.95□□□□□ -0.98
IFT140Q96RY7 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC8.95□□□□□ -0.98
IFT140Q96RY7 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC8.95□□□□□ -0.98
IFT140Q96RY7 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
IFT140Q96RY7 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
IFT140Q96RY7 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
IFT140Q96RY7 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
IFT140Q96RY7 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 AC092747.4-201ENST00000620519 1861 ntBASIC8.94□□□□□ -0.98
IFT140Q96RY7 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
IFT140Q96RY7 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
IFT140Q96RY7 MIR105-1-201ENST00000385222 81 ntBASIC8.94□□□□□ -0.98
IFT140Q96RY7 RN7SKP27-201ENST00000410684 333 ntBASIC8.94□□□□□ -0.98
IFT140Q96RY7 GTF2IP2-201ENST00000424290 697 ntBASIC8.94□□□□□ -0.98
IFT140Q96RY7 TMEM183AP1-205ENST00000432739 290 ntBASIC8.94□□□□□ -0.98
IFT140Q96RY7 AL359265.2-201ENST00000434367 631 ntBASIC8.94□□□□□ -0.98
IFT140Q96RY7 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC8.94□□□□□ -0.98
IFT140Q96RY7 RPL7AP28-201ENST00000464513 571 ntBASIC8.94□□□□□ -0.98
IFT140Q96RY7 ATP5LP5-201ENST00000483050 299 ntBASIC8.94□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms