Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 MIR640-201ENST00000385086 96 ntBASIC5.2□□□□□ -1.58
VPS13AQ96RL7 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.2□□□□□ -1.58
VPS13AQ96RL7 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 AC104634.1-201ENST00000452720 462 ntBASIC5.2□□□□□ -1.58
VPS13AQ96RL7 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 AC084824.1-201ENST00000550917 1005 ntBASIC5.2□□□□□ -1.58
VPS13AQ96RL7 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 CD109-202ENST00000422508 9221 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 KNOP1-201ENST00000219837 6432 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 MEMO1P5-201ENST00000604810 406 ntBASIC5.2□□□□□ -1.58
VPS13AQ96RL7 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 PABPC1P8-201ENST00000452851 2086 ntBASIC5.2□□□□□ -1.58
VPS13AQ96RL7 TLN2-211ENST00000636159 7441 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 ARHGEF11-202ENST00000368194 6889 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.2□□□□□ -1.58
VPS13AQ96RL7 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 OR52A4P-201ENST00000472867 958 ntBASIC5.2□□□□□ -1.58
VPS13AQ96RL7 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 RNA5SP464-201ENST00000516251 108 ntBASIC5.2□□□□□ -1.58
VPS13AQ96RL7 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC5.2□□□□□ -1.58
VPS13AQ96RL7 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 ARID1B-232ENST00000637904 5913 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
VPS13AQ96RL7 AC005224.3-201ENST00000584683 2140 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 TRERF1-204ENST00000372922 7286 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 RBM7-204ENST00000541475 6725 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 YWHABP1-201ENST00000445359 727 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 HMGN2P25-201ENST00000486956 268 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AC053481.3-201ENST00000577881 843 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AC079414.3-201ENST00000612986 1090 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 MTCO1P1-201ENST00000624263 1081 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AL137100.1-201ENST00000556703 1620 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AC007996.1-201ENST00000620414 2821 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 RNA5SP326-201ENST00000363209 110 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AL356218.2-201ENST00000605264 187 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 AL353763.1-201ENST00000624467 1628 ntBASIC5.19□□□□□ -1.58
VPS13AQ96RL7 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 MTHFD1-202ENST00000545908 6814 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 PARN-201ENST00000341484 2100 ntTSL 2 BASIC5.19□□□□□ -1.58
VPS13AQ96RL7 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms