Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC006335.2-201ENST00000437993 330 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC093166.3-201ENST00000448785 303 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC42Q96M95 RN7SL583P-201ENST00000475692 287 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 AP000797.2-201ENST00000475768 606 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC087672.1-201ENST00000479876 766 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 RPS3AP15-201ENST00000483874 781 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 LSM3P4-201ENST00000502948 309 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 Y_RNA.667-201ENST00000516212 107 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 RNA5SP230-201ENST00000517039 122 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 AP000648.1-201ENST00000529682 397 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC084121.1-201ENST00000533882 835 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC108738.1-201ENST00000603703 237 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 AL031601.1-201ENST00000605702 394 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 AP001052.1-201ENST00000626421 99 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 AC073869.8-201ENST00000641806 335 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC42Q96M95 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.93□□□□□ -1.46
CCDC42Q96M95 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC42Q96M95 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 MRRFP1-201ENST00000435941 1675 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 Z83820.1-201ENST00000456978 1499 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 AL358178.1-201ENST00000407698 397 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 MORN2-202ENST00000409077 465 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 BX323845.3-201ENST00000428215 527 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 AL354893.1-201ENST00000433735 348 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 AMYP1-201ENST00000440059 1023 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC016772.1-201ENST00000444170 1261 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC018980.1-201ENST00000457848 862 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 RN7SL612P-201ENST00000497704 295 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 IGBP1P4-201ENST00000503202 879 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 NENFP3-201ENST00000503735 313 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC098976.1-201ENST00000513014 541 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 OR5H7P-201ENST00000514084 930 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC092709.1-201ENST00000521355 1045 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC138832.1-201ENST00000522871 556 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 RBM7-208ENST00000545678 867 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC002310.3-201ENST00000569728 723 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 AL390318.1-201ENST00000624564 687 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC42Q96M95 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC42Q96M95 TCP11X1-202ENST00000622971 1372 ntBASIC5.92□□□□□ -1.46
CCDC42Q96M95 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.91□□□□□ -1.46
CCDC42Q96M95 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
CCDC42Q96M95 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.91□□□□□ -1.46
CCDC42Q96M95 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.91□□□□□ -1.46
CCDC42Q96M95 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
CCDC42Q96M95 AC092376.2-201ENST00000622621 4116 ntBASIC5.91□□□□□ -1.46
CCDC42Q96M95 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
CCDC42Q96M95 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC42Q96M95 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC42Q96M95 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC42Q96M95 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC42Q96M95 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CCDC42Q96M95 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC42Q96M95 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CCDC42Q96M95 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC42Q96M95 RNU1-150P-201ENST00000362491 162 ntBASIC5.91□□□□□ -1.46
CCDC42Q96M95 SNORA64.1-201ENST00000362600 132 ntBASIC5.91□□□□□ -1.46
CCDC42Q96M95 RNA5SP477-201ENST00000362639 119 ntBASIC5.91□□□□□ -1.46
CCDC42Q96M95 U3.7-201ENST00000363668 216 ntBASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms