Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
USP39Q53GS9 MIR323A-201ENST00000362199 86 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 RNU6-670P-201ENST00000364312 104 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
USP39Q53GS9 LYPLA1P3-201ENST00000402650 695 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 AL139039.2-201ENST00000407436 479 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 XIST-201ENST00000416330 750 ntTSL 2 BASIC6.4□□□□□ -1.38
USP39Q53GS9 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.4□□□□□ -1.38
USP39Q53GS9 SETP9-201ENST00000423837 832 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC6.4□□□□□ -1.38
USP39Q53GS9 AL139415.1-201ENST00000424862 352 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 TRGV7-201ENST00000427089 353 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
USP39Q53GS9 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC6.4□□□□□ -1.38
USP39Q53GS9 RPL23AP19-201ENST00000436229 369 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 ELOCP3-201ENST00000439303 348 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 AL606490.8-201ENST00000441624 319 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 MTND1P1-201ENST00000445453 368 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC6.4□□□□□ -1.38
USP39Q53GS9 MORF4L1P4-201ENST00000450245 976 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC6.4□□□□□ -1.38
USP39Q53GS9 HLA-DPA3-207ENST00000454398 229 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.4□□□□□ -1.38
USP39Q53GS9 ACA64.1-201ENST00000459171 127 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 AC074386.1-201ENST00000476560 767 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.4□□□□□ -1.38
USP39Q53GS9 OR4D12P-201ENST00000509361 911 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 IGLV3-6-201ENST00000523937 250 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
USP39Q53GS9 AC074029.2-201ENST00000551045 634 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 CKS1BP1-201ENST00000555221 240 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.4□□□□□ -1.38
USP39Q53GS9 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC6.4□□□□□ -1.38
USP39Q53GS9 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC6.4□□□□□ -1.38
USP39Q53GS9 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC6.4□□□□□ -1.38
USP39Q53GS9 AC113368.1-201ENST00000603736 382 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 AC078880.5-201ENST00000617845 421 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 AC091304.6-201ENST00000619761 202 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.4□□□□□ -1.38
USP39Q53GS9 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.4□□□□□ -1.38
USP39Q53GS9 NCOA4P2-201ENST00000340589 1813 ntBASIC6.4□□□□□ -1.38
USP39Q53GS9 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.4□□□□□ -1.39
USP39Q53GS9 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC6.4□□□□□ -1.39
USP39Q53GS9 AL354854.1-201ENST00000455940 1363 ntBASIC6.4□□□□□ -1.39
USP39Q53GS9 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
USP39Q53GS9 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
USP39Q53GS9 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
USP39Q53GS9 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
USP39Q53GS9 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
USP39Q53GS9 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
USP39Q53GS9 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
USP39Q53GS9 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 AC110792.3-201ENST00000595906 1614 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 SAGE3P-201ENST00000619800 1635 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
USP39Q53GS9 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.39□□□□□ -1.39
USP39Q53GS9 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.39□□□□□ -1.39
USP39Q53GS9 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.39□□□□□ -1.39
USP39Q53GS9 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.39□□□□□ -1.39
USP39Q53GS9 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.39□□□□□ -1.39
USP39Q53GS9 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC6.39□□□□□ -1.39
USP39Q53GS9 RNU6-152P-201ENST00000384037 107 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.39□□□□□ -1.39
USP39Q53GS9 RNA5SP178-201ENST00000410380 128 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 RN7SKP182-201ENST00000410772 298 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC6.39□□□□□ -1.39
USP39Q53GS9 CDY17P-201ENST00000414121 1282 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC6.39□□□□□ -1.39
USP39Q53GS9 MTCO3P4-201ENST00000419236 787 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 MARK2P12-201ENST00000420129 585 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC6.39□□□□□ -1.39
USP39Q53GS9 CHEK2P5-201ENST00000423877 246 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 GSTA7P-201ENST00000438425 448 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 AC245047.2-201ENST00000441060 530 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 SUMO2P1-206ENST00000445436 284 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 MOB1AP2-201ENST00000446060 614 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC6.39□□□□□ -1.39
USP39Q53GS9 Z73417.1-201ENST00000447373 778 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 NPM1P19-201ENST00000450070 712 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 RPL7P61-201ENST00000451721 751 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 MTCO3P16-201ENST00000454456 754 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 AC092824.1-201ENST00000483524 576 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 RPL23AP73-201ENST00000492507 471 ntBASIC6.39□□□□□ -1.39
USP39Q53GS9 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC6.39□□□□□ -1.39
USP39Q53GS9 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
USP39Q53GS9 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms