Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC022960.3-201ENST00000619794 441 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC007204.1-201ENST00000621794 555 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC097460.3-201ENST00000623099 442 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 MVP-219ENST00000629059 120 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXA1P49639 CDY11P-201ENST00000447168 1651 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC4.98□□□□□ -1.61
HOXA1P49639 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
HOXA1P49639 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC4.98□□□□□ -1.61
HOXA1P49639 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
HOXA1P49639 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HOXA1P49639 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 HSPA8P19-201ENST00000505359 1517 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 AC009962.1-201ENST00000567327 3813 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXA1P49639 CASC19-238ENST00000641523 1558 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA1P49639 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 MIR365B-201ENST00000362317 111 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 SNORD115-48-201ENST00000364764 76 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 SNORA43.1-201ENST00000364863 140 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 MIR27A-201ENST00000385073 78 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXA1P49639 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA1P49639 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA1P49639 UBE2D3P3-201ENST00000426992 425 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 AL645939.3-201ENST00000435408 225 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 RPS3AP38-201ENST00000435889 763 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 AC007000.2-201ENST00000442564 487 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA1P49639 OR52I1-201ENST00000450052 1050 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 MTND2P6-201ENST00000455337 1030 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AL354872.1-201ENST00000456361 967 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 RN7SL372P-201ENST00000461982 298 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AC078857.1-201ENST00000469870 667 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 RPS7P11-201ENST00000484240 586 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AC091544.1-201ENST00000484702 348 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 RPL23AP73-201ENST00000492507 471 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 AK4P6-201ENST00000505168 528 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 NAMPTP2-201ENST00000505629 1115 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC4.97□□□□□ -1.61
HOXA1P49639 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 AC130366.1-201ENST00000526505 1192 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AP002004.1-206ENST00000532441 876 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.97□□□□□ -1.61
HOXA1P49639 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.97□□□□□ -1.61
HOXA1P49639 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA1P49639 AC093510.2-201ENST00000562820 896 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 AC090774.2-201ENST00000584708 322 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.97□□□□□ -1.61
HOXA1P49639 AC005332.4-201ENST00000592752 579 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 RPL7AP69-201ENST00000595306 806 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.97□□□□□ -1.61
HOXA1P49639 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA1P49639 AL356608.1-201ENST00000610034 820 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 AC023510.2-201ENST00000622162 746 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA1P49639 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA1P49639 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
HOXA1P49639 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA1P49639 ZNF652P1-201ENST00000442420 1309 ntBASIC4.97□□□□□ -1.61
HOXA1P49639 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
HOXA1P49639 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.96□□□□□ -1.61
HOXA1P49639 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.61
HOXA1P49639 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXA1P49639 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.96□□□□□ -1.62
HOXA1P49639 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA1P49639 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
HOXA1P49639 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms