Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HNF4AP41235 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 PARP4P2-201ENST00000446672 3326 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 AL353796.1-201ENST00000561542 3241 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.69□□□□□ -1.5
HNF4AP41235 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 AC016745.2-201ENST00000608834 3443 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.69□□□□□ -1.5
HNF4AP41235 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 AL158152.1-201ENST00000602652 1435 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 SELENOWP1-201ENST00000322792 252 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
HNF4AP41235 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 RNU6-891P-201ENST00000384280 111 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 AC016739.1-201ENST00000405359 345 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.69□□□□□ -1.5
HNF4AP41235 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.69□□□□□ -1.5
HNF4AP41235 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.69□□□□□ -1.5
HNF4AP41235 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.69□□□□□ -1.5
HNF4AP41235 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 TUBB4BP6-201ENST00000437576 479 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 AC005077.1-201ENST00000449226 375 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 CFL1P4-201ENST00000451536 498 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 CST12P-201ENST00000457644 362 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 RNU1-88P-201ENST00000459274 128 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.69□□□□□ -1.5
HNF4AP41235 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 MIR2117-201ENST00000516780 80 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.69□□□□□ -1.5
HNF4AP41235 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.69□□□□□ -1.5
HNF4AP41235 AC136777.2-201ENST00000522979 358 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 AP003396.4-201ENST00000527574 265 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.69□□□□□ -1.5
HNF4AP41235 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.69□□□□□ -1.5
HNF4AP41235 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.69□□□□□ -1.5
HNF4AP41235 RPA2P1-201ENST00000556557 721 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 AC090826.1-203ENST00000569235 490 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.69□□□□□ -1.5
HNF4AP41235 MIR4271-201ENST00000582451 67 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 AC005244.1-201ENST00000582566 339 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 AC025857.2-201ENST00000602711 238 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.69□□□□□ -1.5
HNF4AP41235 AL139099.4-201ENST00000614802 114 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 AC245014.3-201ENST00000618589 347 ntBASIC5.69□□□□□ -1.5
HNF4AP41235 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.69□□□□□ -1.5
HNF4AP41235 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
HNF4AP41235 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
HNF4AP41235 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HNF4AP41235 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.69□□□□□ -1.5
HNF4AP41235 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.68□□□□□ -1.5
HNF4AP41235 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
HNF4AP41235 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.68□□□□□ -1.5
HNF4AP41235 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HNF4AP41235 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.68□□□□□ -1.5
HNF4AP41235 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
HNF4AP41235 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HNF4AP41235 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
HNF4AP41235 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
HNF4AP41235 TMSB4XP2-201ENST00000335179 210 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.68□□□□□ -1.5
HNF4AP41235 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
HNF4AP41235 RPL11P3-201ENST00000395256 523 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 AL354890.1-201ENST00000413730 346 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.68□□□□□ -1.5
HNF4AP41235 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.68□□□□□ -1.5
HNF4AP41235 GEMIN2P1-201ENST00000454246 752 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 AL133244.1-201ENST00000456007 258 ntBASIC5.68□□□□□ -1.5
HNF4AP41235 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.68□□□□□ -1.5
HNF4AP41235 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.68□□□□□ -1.5
HNF4AP41235 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.68□□□□□ -1.5
HNF4AP41235 OR5H7P-201ENST00000514084 930 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms