Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.28□□□□□ -1.56
SDC1P18827 RN7SL170P-201ENST00000487098 295 ntBASIC5.28□□□□□ -1.56
SDC1P18827 RPL37P23-201ENST00000492641 294 ntBASIC5.28□□□□□ -1.56
SDC1P18827 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SDC1P18827 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.28□□□□□ -1.56
SDC1P18827 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.28□□□□□ -1.56
SDC1P18827 GTF2IP11-201ENST00000526931 420 ntBASIC5.28□□□□□ -1.56
SDC1P18827 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.28□□□□□ -1.56
SDC1P18827 AC090286.3-201ENST00000573133 187 ntBASIC5.28□□□□□ -1.56
SDC1P18827 MIR7853-201ENST00000584820 132 ntBASIC5.28□□□□□ -1.56
SDC1P18827 LSM1P2-201ENST00000604911 322 ntBASIC5.28□□□□□ -1.56
SDC1P18827 MIR7109-201ENST00000613748 65 ntBASIC5.28□□□□□ -1.56
SDC1P18827 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.28□□□□□ -1.56
SDC1P18827 AC025262.3-201ENST00000623666 360 ntBASIC5.28□□□□□ -1.56
SDC1P18827 AL078595.2-201ENST00000605309 1780 ntBASIC5.28□□□□□ -1.56
SDC1P18827 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.28□□□□□ -1.56
SDC1P18827 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SDC1P18827 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.28□□□□□ -1.56
SDC1P18827 SRRM1P3-201ENST00000426911 2678 ntBASIC5.28□□□□□ -1.56
SDC1P18827 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.28□□□□□ -1.56
SDC1P18827 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.28□□□□□ -1.56
SDC1P18827 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SDC1P18827 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SDC1P18827 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 AC027279.1-201ENST00000568885 4284 ntBASIC5.27□□□□□ -1.57
SDC1P18827 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 MIR375-201ENST00000362103 64 ntBASIC5.27□□□□□ -1.57
SDC1P18827 RNA5SP131-201ENST00000365452 119 ntBASIC5.27□□□□□ -1.57
SDC1P18827 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 HMGB1P20-201ENST00000402555 677 ntBASIC5.27□□□□□ -1.57
SDC1P18827 RMRPP5-201ENST00000411156 267 ntBASIC5.27□□□□□ -1.57
SDC1P18827 RANP7-201ENST00000418085 644 ntBASIC5.27□□□□□ -1.57
SDC1P18827 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.27□□□□□ -1.57
SDC1P18827 MTCO3P17-201ENST00000443775 513 ntBASIC5.27□□□□□ -1.57
SDC1P18827 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.27□□□□□ -1.57
SDC1P18827 AP006222.1-205ENST00000450734 457 ntBASIC5.27□□□□□ -1.57
SDC1P18827 AC090602.1-201ENST00000469695 252 ntBASIC5.27□□□□□ -1.57
SDC1P18827 AC090589.1-201ENST00000473109 362 ntBASIC5.27□□□□□ -1.57
SDC1P18827 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.27□□□□□ -1.57
SDC1P18827 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 AC006499.4-201ENST00000510947 694 ntBASIC5.27□□□□□ -1.57
SDC1P18827 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.27□□□□□ -1.57
SDC1P18827 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SDC1P18827 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 AP005901.4-201ENST00000577336 569 ntBASIC5.27□□□□□ -1.57
SDC1P18827 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 AP005431.1-201ENST00000618479 319 ntBASIC5.27□□□□□ -1.57
SDC1P18827 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
SDC1P18827 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.27□□□□□ -1.57
SDC1P18827 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SDC1P18827 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
SDC1P18827 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.26□□□□□ -1.57
SDC1P18827 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.26□□□□□ -1.57
SDC1P18827 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.26□□□□□ -1.57
SDC1P18827 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.26□□□□□ -1.57
SDC1P18827 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.26□□□□□ -1.57
SDC1P18827 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 OR7E25P-201ENST00000344844 931 ntBASIC5.26□□□□□ -1.57
SDC1P18827 RNA5SP394-201ENST00000364216 119 ntBASIC5.26□□□□□ -1.57
SDC1P18827 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.26□□□□□ -1.57
SDC1P18827 SNORA5.1-201ENST00000384275 131 ntBASIC5.26□□□□□ -1.57
SDC1P18827 AL050305.1-201ENST00000399993 1230 ntBASIC5.26□□□□□ -1.57
SDC1P18827 AC079809.1-201ENST00000415468 276 ntBASIC5.26□□□□□ -1.57
SDC1P18827 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.26□□□□□ -1.57
SDC1P18827 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.26□□□□□ -1.57
SDC1P18827 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.26□□□□□ -1.57
SDC1P18827 SETP9-201ENST00000423837 832 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms