Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MIR4301-201ENST00000577203 66 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC025574.2-201ENST00000615621 514 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC090510.2-201ENST00000617465 629 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 DMD-228ENST00000541735 7080 ntTSL 5 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 OR4K12P-201ENST00000406538 961 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AL133173.1-201ENST00000423458 397 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC005532.2-201ENST00000467154 373 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC096996.1-201ENST00000563813 325 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 LINC01616-201ENST00000561816 2280 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 USP9YP3-201ENST00000434481 1766 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 RNU1-19P-201ENST00000363306 165 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 RN7SKP29-201ENST00000410957 272 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC099677.3-201ENST00000427081 395 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 DPPA3P2-201ENST00000553589 478 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 AL512329.2-201ENST00000607350 548 ntBASIC1.74□□□□□ -2.13
SYNE1Q8NF91 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SYNE1Q8NF91 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AL133325.1-201ENST00000421090 382 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AURKAPS1-201ENST00000451805 1212 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 RPL35AP19-201ENST00000469425 329 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 CBX1P5-201ENST00000475330 559 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 HSPE1P2-201ENST00000554777 306 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC133644.2-201ENST00000608142 540 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC140134.1-201ENST00000511830 3544 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC009779.8-201ENST00000641684 4384 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 SNRPEP6-201ENST00000407465 277 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC021074.2-201ENST00000468434 172 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC072052.1-201ENST00000496556 306 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 DCN-210ENST00000547568 823 ntTSL 3 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 FKBP1AP1-201ENST00000594588 318 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 DPY19L2P2-203ENST00000435536 1858 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 DMD-222ENST00000474231 5209 ntTSL 5 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC131971.1-201ENST00000332881 1482 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 IGLV2-34-201ENST00000490007 283 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 OR51K1P-201ENST00000510214 950 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 SCARNA9-201ENST00000530422 353 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC1.73□□□□□ -2.13
SYNE1Q8NF91 AC008115.4-201ENST00000619780 775 ntBASIC1.73□□□□□ -2.13
SYNE1Q8NF91 SAMMSON-227ENST00000642114 1199 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms