Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 RPL21P47-201ENST00000483696 477 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AC011037.1-201ENST00000483964 558 ntBASIC6.08□□□□□ -1.44
MSX2P35548 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 MTCYBP37-201ENST00000510642 1133 ntBASIC6.08□□□□□ -1.44
MSX2P35548 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC6.08□□□□□ -1.44
MSX2P35548 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.08□□□□□ -1.44
MSX2P35548 RNU6-1129P-201ENST00000515964 104 ntBASIC6.08□□□□□ -1.44
MSX2P35548 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 AP001994.1-201ENST00000527539 826 ntBASIC6.08□□□□□ -1.44
MSX2P35548 HNRNPCP8-201ENST00000528764 888 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AP003461.1-201ENST00000528866 78 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
MSX2P35548 MIR1273F-201ENST00000580581 99 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AC105227.1-201ENST00000586227 438 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.08□□□□□ -1.44
MSX2P35548 QTRT1P1-201ENST00000604344 1078 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX2P35548 AC007349.4-201ENST00000608114 532 ntBASIC6.08□□□□□ -1.44
MSX2P35548 VIS1.1-201ENST00000610517 203 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AC007786.3-201ENST00000615154 596 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AL603755.1-201ENST00000619504 163 ntBASIC6.08□□□□□ -1.44
MSX2P35548 AC061999.1-201ENST00000624454 177 ntBASIC6.08□□□□□ -1.44
MSX2P35548 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX2P35548 MAPK10-287ENST00000641217 3037 ntBASIC6.08□□□□□ -1.44
MSX2P35548 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX2P35548 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
MSX2P35548 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.08□□□□□ -1.44
MSX2P35548 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX2P35548 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 ELL2P3-201ENST00000457883 1602 ntBASIC6.07□□□□□ -1.44
MSX2P35548 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
MSX2P35548 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 PDCL3P5-201ENST00000398028 722 ntBASIC6.07□□□□□ -1.44
MSX2P35548 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.07□□□□□ -1.44
MSX2P35548 TAF9BP2-201ENST00000400856 499 ntBASIC6.07□□□□□ -1.44
MSX2P35548 RPL23AP17-201ENST00000401064 499 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AL021331.1-201ENST00000402817 582 ntBASIC6.07□□□□□ -1.44
MSX2P35548 GSTA8P-201ENST00000404253 637 ntBASIC6.07□□□□□ -1.44
MSX2P35548 RNU4-72P-201ENST00000410754 173 ntBASIC6.07□□□□□ -1.44
MSX2P35548 RN7SKP268-201ENST00000411107 316 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AL008987.1-201ENST00000415528 237 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC6.07□□□□□ -1.44
MSX2P35548 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 RPS3AP37-201ENST00000419176 745 ntBASIC6.07□□□□□ -1.44
MSX2P35548 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC6.07□□□□□ -1.44
MSX2P35548 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX2P35548 DEFB130D-201ENST00000426866 237 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 GTF2IP3-201ENST00000433887 494 ntBASIC6.07□□□□□ -1.44
MSX2P35548 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 AL445567.1-201ENST00000439121 144 ntBASIC6.07□□□□□ -1.44
MSX2P35548 PRKAR1AP1-201ENST00000441422 1162 ntBASIC6.07□□□□□ -1.44
MSX2P35548 MTND2P19-201ENST00000449129 1012 ntBASIC6.07□□□□□ -1.44
MSX2P35548 LINC01839-201ENST00000451348 727 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX2P35548 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.07□□□□□ -1.44
MSX2P35548 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX2P35548 AL445687.2-201ENST00000458156 728 ntBASIC6.07□□□□□ -1.44
MSX2P35548 RPL6P9-201ENST00000466502 859 ntBASIC6.07□□□□□ -1.44
MSX2P35548 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 TUBBP11-201ENST00000472255 252 ntBASIC6.07□□□□□ -1.44
MSX2P35548 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX2P35548 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.07□□□□□ -1.44
MSX2P35548 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX2P35548 AC105420.1-201ENST00000504389 582 ntBASIC6.07□□□□□ -1.44
MSX2P35548 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.07□□□□□ -1.44
MSX2P35548 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.07□□□□□ -1.44
MSX2P35548 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms