Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
BDNFP23560 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
BDNFP23560 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
BDNFP23560 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.35□□□□□ -1.39
BDNFP23560 FBXL21-201ENST00000297158 1305 ntBASIC6.35□□□□□ -1.39
BDNFP23560 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
BDNFP23560 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
BDNFP23560 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
BDNFP23560 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC6.35□□□□□ -1.39
BDNFP23560 RNU6-225P-201ENST00000384613 103 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AP003170.5-201ENST00000397185 335 ntBASIC6.35□□□□□ -1.39
BDNFP23560 EI24P3-201ENST00000399046 1062 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AC116036.1-201ENST00000412199 367 ntBASIC6.35□□□□□ -1.39
BDNFP23560 TMA16P2-201ENST00000413187 601 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.35□□□□□ -1.39
BDNFP23560 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 BX284632.2-201ENST00000421091 399 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 RPS29P14-201ENST00000431518 171 ntBASIC6.35□□□□□ -1.39
BDNFP23560 VN1R110P-201ENST00000438988 971 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AL512605.1-202ENST00000441919 381 ntBASIC6.35□□□□□ -1.39
BDNFP23560 FHP1-201ENST00000442741 703 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AC079922.1-201ENST00000443291 359 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AL359955.2-201ENST00000445380 353 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 AL591623.2-201ENST00000449978 222 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AL591363.1-201ENST00000450091 483 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AC084754.1-201ENST00000463466 464 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.35□□□□□ -1.39
BDNFP23560 AC034244.2-201ENST00000514668 858 ntBASIC6.35□□□□□ -1.39
BDNFP23560 RNA5SP271-201ENST00000516700 88 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC6.35□□□□□ -1.39
BDNFP23560 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC6.35□□□□□ -1.39
BDNFP23560 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.35□□□□□ -1.39
BDNFP23560 HMGB1P42-201ENST00000532126 553 ntBASIC6.35□□□□□ -1.39
BDNFP23560 NPM1P35-201ENST00000533043 868 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.35□□□□□ -1.39
BDNFP23560 MIR4776-2-201ENST00000580204 80 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.35□□□□□ -1.39
BDNFP23560 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 AC119403.2-201ENST00000590960 598 ntBASIC6.35□□□□□ -1.39
BDNFP23560 AC027334.1-201ENST00000603257 310 ntBASIC6.35□□□□□ -1.39
BDNFP23560 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 uc_338.26-201ENST00000612659 160 ntBASIC6.35□□□□□ -1.39
BDNFP23560 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.35□□□□□ -1.39
BDNFP23560 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
BDNFP23560 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
BDNFP23560 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.35□□□□□ -1.39
BDNFP23560 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.35□□□□□ -1.39
BDNFP23560 AC107027.3-201ENST00000565095 3473 ntBASIC6.35□□□□□ -1.39
BDNFP23560 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
BDNFP23560 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
BDNFP23560 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 AL662795.2-201ENST00000624252 3706 ntBASIC6.35□□□□□ -1.39
BDNFP23560 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.35□□□□□ -1.39
BDNFP23560 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
BDNFP23560 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
BDNFP23560 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.34□□□□□ -1.39
BDNFP23560 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
BDNFP23560 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
BDNFP23560 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
BDNFP23560 AC117409.1-201ENST00000470499 1310 ntBASIC6.34□□□□□ -1.39
BDNFP23560 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.34□□□□□ -1.39
BDNFP23560 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
BDNFP23560 AC023490.2-201ENST00000359859 470 ntBASIC6.34□□□□□ -1.39
BDNFP23560 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
BDNFP23560 AC233289.1-201ENST00000403700 508 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AL358178.1-201ENST00000407698 397 ntBASIC6.34□□□□□ -1.39
BDNFP23560 RN7SKP151-201ENST00000410230 316 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AL590806.1-201ENST00000415818 853 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AC009302.1-201ENST00000417147 390 ntBASIC6.34□□□□□ -1.39
BDNFP23560 RPS17P17-201ENST00000419392 409 ntBASIC6.34□□□□□ -1.39
BDNFP23560 OR5M12P-201ENST00000423388 929 ntBASIC6.34□□□□□ -1.39
BDNFP23560 BX323845.3-201ENST00000428215 527 ntBASIC6.34□□□□□ -1.39
BDNFP23560 PCBP2P1-201ENST00000437262 977 ntBASIC6.34□□□□□ -1.39
BDNFP23560 MTCYBP12-201ENST00000440559 1134 ntBASIC6.34□□□□□ -1.39
BDNFP23560 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
BDNFP23560 AL627224.1-201ENST00000448334 444 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.34□□□□□ -1.39
BDNFP23560 AL354710.1-201ENST00000453641 246 ntBASIC6.34□□□□□ -1.39
BDNFP23560 GEMIN2P1-201ENST00000454246 752 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AC023245.1-201ENST00000468501 517 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AC020779.1-201ENST00000478757 796 ntBASIC6.34□□□□□ -1.39
BDNFP23560 RN7SL809P-201ENST00000482040 297 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.34□□□□□ -1.39
BDNFP23560 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC6.34□□□□□ -1.39
BDNFP23560 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC6.34□□□□□ -1.39
BDNFP23560 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC6.34□□□□□ -1.39
BDNFP23560 AC021146.7-201ENST00000509604 775 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.34□□□□□ -1.39
BDNFP23560 AC016550.3-201ENST00000515706 767 ntBASIC6.34□□□□□ -1.39
BDNFP23560 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.34□□□□□ -1.39
BDNFP23560 IGKV2-4-201ENST00000523070 340 ntBASIC6.34□□□□□ -1.39
BDNFP23560 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 157 ms