Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC090888.3-201ENST00000558917 509 ntBASIC5.73□□□□□ -1.49
MSH3P20585 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5.73□□□□□ -1.49
MSH3P20585 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.73□□□□□ -1.49
MSH3P20585 AL513327.3-201ENST00000602618 469 ntBASIC5.73□□□□□ -1.49
MSH3P20585 AC100767.2-201ENST00000604840 693 ntBASIC5.73□□□□□ -1.49
MSH3P20585 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.73□□□□□ -1.49
MSH3P20585 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC5.73□□□□□ -1.49
MSH3P20585 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
MSH3P20585 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.73□□□□□ -1.49
MSH3P20585 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH3P20585 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH3P20585 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH3P20585 AL034546.1-201ENST00000623740 3693 ntBASIC5.72□□□□□ -1.49
MSH3P20585 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.72□□□□□ -1.49
MSH3P20585 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
MSH3P20585 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH3P20585 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 RNA5SP510-201ENST00000364697 99 ntBASIC5.72□□□□□ -1.49
MSH3P20585 RN7SKP78-201ENST00000364711 318 ntBASIC5.72□□□□□ -1.49
MSH3P20585 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 NPM1P37-201ENST00000403105 874 ntBASIC5.72□□□□□ -1.49
MSH3P20585 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 AL357752.1-201ENST00000412817 349 ntBASIC5.72□□□□□ -1.49
MSH3P20585 RANP7-201ENST00000418085 644 ntBASIC5.72□□□□□ -1.49
MSH3P20585 VN1R21P-201ENST00000426703 765 ntBASIC5.72□□□□□ -1.49
MSH3P20585 OR7E116P-201ENST00000448529 957 ntBASIC5.72□□□□□ -1.49
MSH3P20585 MEMO1P4-201ENST00000453590 386 ntBASIC5.72□□□□□ -1.49
MSH3P20585 RN7SL284P-201ENST00000498823 275 ntBASIC5.72□□□□□ -1.49
MSH3P20585 NENFP3-201ENST00000503735 313 ntBASIC5.72□□□□□ -1.49
MSH3P20585 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.72□□□□□ -1.49
MSH3P20585 AC026782.2-201ENST00000510845 636 ntBASIC5.72□□□□□ -1.49
MSH3P20585 SNORD116-30-201ENST00000516468 85 ntBASIC5.72□□□□□ -1.49
MSH3P20585 SCARNA6.1-201ENST00000516989 238 ntBASIC5.72□□□□□ -1.49
MSH3P20585 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.72□□□□□ -1.49
MSH3P20585 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.72□□□□□ -1.49
MSH3P20585 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.72□□□□□ -1.49
MSH3P20585 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 NANOGP3-201ENST00000605855 286 ntBASIC5.72□□□□□ -1.49
MSH3P20585 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 AP001962.1-201ENST00000624114 559 ntBASIC5.72□□□□□ -1.49
MSH3P20585 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.72□□□□□ -1.49
MSH3P20585 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
MSH3P20585 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 AC106872.5-201ENST00000508856 1416 ntBASIC5.72□□□□□ -1.49
MSH3P20585 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH3P20585 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.72□□□□□ -1.49
MSH3P20585 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.72□□□□□ -1.49
MSH3P20585 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
MSH3P20585 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.71□□□□□ -1.49
MSH3P20585 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.49
MSH3P20585 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
MSH3P20585 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSH3P20585 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
MSH3P20585 MIR375-201ENST00000362103 64 ntBASIC5.71□□□□□ -1.5
MSH3P20585 U3.10-201ENST00000364459 214 ntBASIC5.71□□□□□ -1.5
MSH3P20585 EEF1B2P8-201ENST00000414101 671 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.71□□□□□ -1.5
MSH3P20585 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.71□□□□□ -1.5
MSH3P20585 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSH3P20585 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSH3P20585 AL445665.1-202ENST00000452436 324 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AC084754.1-201ENST00000463466 464 ntBASIC5.71□□□□□ -1.5
MSH3P20585 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSH3P20585 OR52A4P-202ENST00000481634 799 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AC022215.1-201ENST00000481770 362 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.71□□□□□ -1.5
MSH3P20585 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AP001960.1-201ENST00000506494 658 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AC113398.2-201ENST00000507630 558 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.71□□□□□ -1.5
MSH3P20585 AC074255.1-201ENST00000511259 501 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AC097486.1-201ENST00000515331 210 ntBASIC5.71□□□□□ -1.5
MSH3P20585 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.71□□□□□ -1.5
MSH3P20585 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.71□□□□□ -1.5
MSH3P20585 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.71□□□□□ -1.5
MSH3P20585 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSH3P20585 AC126615.2-201ENST00000553003 515 ntBASIC5.71□□□□□ -1.5
MSH3P20585 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.71□□□□□ -1.5
MSH3P20585 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.71□□□□□ -1.5
MSH3P20585 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms