Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.7□□□□□ -1.5
LDLRP01130 MTND2P17-201ENST00000550281 688 ntBASIC5.7□□□□□ -1.5
LDLRP01130 AC011270.1-201ENST00000558606 583 ntBASIC5.7□□□□□ -1.5
LDLRP01130 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
LDLRP01130 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC5.7□□□□□ -1.5
LDLRP01130 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LDLRP01130 AL021707.7-201ENST00000607991 416 ntBASIC5.7□□□□□ -1.5
LDLRP01130 SDR42E1P1-201ENST00000611327 477 ntBASIC5.7□□□□□ -1.5
LDLRP01130 MIR6719-201ENST00000622428 87 ntBASIC5.7□□□□□ -1.5
LDLRP01130 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.7□□□□□ -1.5
LDLRP01130 AC073488.3-201ENST00000631611 778 ntBASIC5.7□□□□□ -1.5
LDLRP01130 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
LDLRP01130 AL139254.3-201ENST00000641097 674 ntBASIC5.7□□□□□ -1.5
LDLRP01130 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LDLRP01130 AL158152.1-201ENST00000602652 1435 ntBASIC5.7□□□□□ -1.5
LDLRP01130 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
LDLRP01130 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
LDLRP01130 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LDLRP01130 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LDLRP01130 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.7□□□□□ -1.5
LDLRP01130 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
LDLRP01130 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LDLRP01130 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
LDLRP01130 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.7□□□□□ -1.5
LDLRP01130 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LDLRP01130 PROS2P-201ENST00000474651 1951 ntBASIC5.69□□□□□ -1.5
LDLRP01130 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
LDLRP01130 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LDLRP01130 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LDLRP01130 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LDLRP01130 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LDLRP01130 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LDLRP01130 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
LDLRP01130 AL022311.1-201ENST00000623726 19416 ntBASIC5.69□□□□□ -1.5
LDLRP01130 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.69□□□□□ -1.5
LDLRP01130 RNA5SP273-201ENST00000362484 113 ntBASIC5.69□□□□□ -1.5
LDLRP01130 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
LDLRP01130 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.69□□□□□ -1.5
LDLRP01130 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.69□□□□□ -1.5
LDLRP01130 AC245096.1-201ENST00000413104 546 ntBASIC5.69□□□□□ -1.5
LDLRP01130 DPPA2P2-201ENST00000418220 897 ntBASIC5.69□□□□□ -1.5
LDLRP01130 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.69□□□□□ -1.5
LDLRP01130 REREP1Y-201ENST00000422655 198 ntBASIC5.69□□□□□ -1.5
LDLRP01130 OR5W1P-201ENST00000423705 938 ntBASIC5.69□□□□□ -1.5
LDLRP01130 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.69□□□□□ -1.5
LDLRP01130 MAPRE1P3-201ENST00000435438 796 ntBASIC5.69□□□□□ -1.5
LDLRP01130 REREP2Y-201ENST00000439103 200 ntBASIC5.69□□□□□ -1.5
LDLRP01130 GAPDHP23-201ENST00000444823 993 ntBASIC5.69□□□□□ -1.5
LDLRP01130 RSU1P1-201ENST00000453416 441 ntBASIC5.69□□□□□ -1.5
LDLRP01130 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC5.69□□□□□ -1.5
LDLRP01130 CST12P-201ENST00000457644 362 ntBASIC5.69□□□□□ -1.5
LDLRP01130 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
LDLRP01130 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.69□□□□□ -1.5
LDLRP01130 AC008410.1-201ENST00000483777 339 ntBASIC5.69□□□□□ -1.5
LDLRP01130 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LDLRP01130 AL136038.1-201ENST00000497246 351 ntBASIC5.69□□□□□ -1.5
LDLRP01130 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC5.69□□□□□ -1.5
LDLRP01130 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.69□□□□□ -1.5
LDLRP01130 ATP5LP3-201ENST00000514223 304 ntBASIC5.69□□□□□ -1.5
LDLRP01130 AC111000.6-201ENST00000514471 709 ntBASIC5.69□□□□□ -1.5
LDLRP01130 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC5.69□□□□□ -1.5
LDLRP01130 AP003396.4-201ENST00000527574 265 ntBASIC5.69□□□□□ -1.5
LDLRP01130 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.69□□□□□ -1.5
LDLRP01130 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.69□□□□□ -1.5
LDLRP01130 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.69□□□□□ -1.5
LDLRP01130 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.69□□□□□ -1.5
LDLRP01130 MIR4489-201ENST00000578869 62 ntBASIC5.69□□□□□ -1.5
LDLRP01130 SNORD95-201ENST00000579879 68 ntBASIC5.69□□□□□ -1.5
LDLRP01130 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC5.69□□□□□ -1.5
LDLRP01130 VN1R81P-201ENST00000602085 372 ntBASIC5.69□□□□□ -1.5
LDLRP01130 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.69□□□□□ -1.5
LDLRP01130 LSM1P2-201ENST00000604911 322 ntBASIC5.69□□□□□ -1.5
LDLRP01130 AC004477.3-201ENST00000614061 590 ntBASIC5.69□□□□□ -1.5
LDLRP01130 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.69□□□□□ -1.5
LDLRP01130 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LDLRP01130 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LDLRP01130 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
LDLRP01130 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
LDLRP01130 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LDLRP01130 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LDLRP01130 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.68□□□□□ -1.5
LDLRP01130 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LDLRP01130 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.68□□□□□ -1.5
LDLRP01130 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LDLRP01130 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
LDLRP01130 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LDLRP01130 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
LDLRP01130 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.68□□□□□ -1.5
LDLRP01130 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LDLRP01130 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
LDLRP01130 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LDLRP01130 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.68□□□□□ -1.5
LDLRP01130 OR52B3P-201ENST00000314715 928 ntBASIC5.68□□□□□ -1.5
LDLRP01130 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
LDLRP01130 RNA5SP110-201ENST00000362638 115 ntBASIC5.68□□□□□ -1.5
LDLRP01130 RN7SKP166-201ENST00000410812 305 ntBASIC5.68□□□□□ -1.5
LDLRP01130 RN7SKP286-201ENST00000410894 299 ntBASIC5.68□□□□□ -1.5
LDLRP01130 EEF1B2P8-201ENST00000414101 671 ntBASIC5.68□□□□□ -1.5
LDLRP01130 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.68□□□□□ -1.5
LDLRP01130 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms