Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RN7SKP72-201ENST00000362327 292 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 RNU6-99P-201ENST00000364721 107 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 MIR217-201ENST00000384817 110 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC245036.1-201ENST00000391727 309 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 ATP5HP3-201ENST00000396994 486 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 ATP6V1G1P7-201ENST00000415853 349 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC062016.2-201ENST00000420950 676 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 DUTP6-201ENST00000425573 462 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 Z93242.1-201ENST00000427102 353 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 MYL6BP1-201ENST00000429485 615 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC007036.1-201ENST00000430537 674 ntTSL 3 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 FECHP1-201ENST00000431896 1214 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AL772284.1-201ENST00000443421 905 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 RPS26P30-201ENST00000443431 335 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC104058.1-201ENST00000448028 297 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AL109809.3-201ENST00000456875 246 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 RPSAP48-201ENST00000466509 889 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC009022.1-201ENST00000472115 496 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC100843.1-201ENST00000475372 550 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC008481.2-201ENST00000483614 531 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 DLX5-202ENST00000486603 1074 ntTSL 2 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 LINC00499-204ENST00000515282 579 ntTSL 5 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 RNU6ATAC39P-201ENST00000516309 149 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 HMGB1P19-201ENST00000517578 577 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 KCTD9P6-201ENST00000522306 950 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 ST13P6-201ENST00000522430 1102 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC083923.1-201ENST00000523708 376 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AL049870.4-201ENST00000555741 486 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC092287.1-201ENST00000565782 463 ntTSL 3 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 TVP23CP2-201ENST00000571473 623 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 U2.1-201ENST00000618978 145 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC016866.3-201ENST00000624037 714 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 LINC02034-201ENST00000635368 760 ntTSL 5 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC007326.3-201ENST00000636418 176 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 RAB5B-210ENST00000553116 3322 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 MXI1-203ENST00000361248 2188 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 DNAJC18-201ENST00000302060 5103 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 FTO-222ENST00000637969 2889 ntTSL 5 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AOX2P-204ENST00000487742 3284 ntBASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 TRIM59-208ENST00000543469 4615 ntTSL 5 BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
VPS9D1Q9Y2B5 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 DARS2-201ENST00000361951 3506 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 WDR78-203ENST00000371026 3848 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 KIF4B-201ENST00000435029 4378 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 PGRMC2-202ENST00000394276 2858 ntTSL 2 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 CSTF2T-201ENST00000331173 4105 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 SHQ1-203ENST00000463369 2065 ntTSL 2 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 GCNT2-216ENST00000495262 2214 ntAPPRIS ALT1 TSL 2 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 ETS1-204ENST00000526145 3389 ntTSL 5 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 C12orf54-201ENST00000314014 887 ntAPPRIS P1 TSL 3 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 DEFB105A-201ENST00000334773 330 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 RPL12-201ENST00000361436 633 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 OR10R3P-201ENST00000361688 942 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 RNA5SP250-201ENST00000362534 119 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 RNU6-1120P-201ENST00000362988 108 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 MDM4-202ENST00000367180 547 ntTSL 3 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 TMEM244-201ENST00000368143 545 ntAPPRIS P1 TSL 2 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 UCMA-201ENST00000378681 826 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 Y_RNA.447-201ENST00000384184 113 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 IGHV2-5-201ENST00000390597 378 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 SNORD115.1-201ENST00000391109 76 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 GAS8-AS1-201ENST00000408886 435 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 AC004129.1-201ENST00000417617 796 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 AC073367.1-201ENST00000421480 697 ntTSL 2 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 DPH3P2-201ENST00000422618 250 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 AC006017.1-201ENST00000424630 673 ntTSL 3 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 LINC01422-202ENST00000438113 517 ntTSL 5 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 PPIAP17-201ENST00000438507 471 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 WDR82P1-201ENST00000439836 939 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 LINC00460-203ENST00000444865 739 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 AC103563.4-201ENST00000454384 368 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 RNU7-157P-201ENST00000459600 66 ntBASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 SSR1-203ENST00000462112 1094 ntTSL 4 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
VPS9D1Q9Y2B5 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms