Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 RPL37AP8-201ENST00000494116 276 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC008629.2-201ENST00000503783 483 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 OR1E3-201ENST00000575608 948 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 AL513327.3-201ENST00000602618 469 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC025857.2-201ENST00000602711 238 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 AL133481.2-203ENST00000607558 139 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 AL355974.3-201ENST00000617383 467 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC022400.9-201ENST00000623633 273 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
NKX3-1Q99801 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NKX3-1Q99801 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 AC004158.1-201ENST00000564508 4319 ntBASIC5.07□□□□□ -1.6
NKX3-1Q99801 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
NKX3-1Q99801 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
NKX3-1Q99801 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
NKX3-1Q99801 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NKX3-1Q99801 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 RNU6-618P-201ENST00000363518 112 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 RN7SKP128-201ENST00000364270 303 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 RN7SKP78-201ENST00000364711 318 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AL139039.2-201ENST00000407436 479 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC069154.1-201ENST00000432914 542 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AMYP1-201ENST00000440059 1023 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AL606490.8-201ENST00000441624 319 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 SEPT14P12-201ENST00000442280 560 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 RPS7P3-201ENST00000443360 580 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC010240.2-201ENST00000445363 1205 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 OR52I1-201ENST00000450052 1050 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC002553.3-201ENST00000453002 341 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AL157777.1-201ENST00000468100 304 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC079080.1-201ENST00000479841 822 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 RWDD4P1-201ENST00000488019 565 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 PFN1P8-201ENST00000497012 543 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 HSD3BP3-201ENST00000514706 994 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC006512.2-201ENST00000543250 486 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC026826.3-201ENST00000561747 158 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC134669.1-201ENST00000581275 672 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AL499605.1-201ENST00000604628 403 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC073111.2-201ENST00000605657 1075 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AL080312.2-201ENST00000613001 630 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC073488.6-201ENST00000632293 754 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 AP000473.2-201ENST00000602659 1537 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
NKX3-1Q99801 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.06□□□□□ -1.6
NKX3-1Q99801 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
NKX3-1Q99801 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.06□□□□□ -1.6
NKX3-1Q99801 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 RNA5SP91-201ENST00000390902 119 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC087752.1-201ENST00000391360 558 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 EEF1B2P8-201ENST00000414101 671 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms