Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MCM3AP-AS1-207ENST00000588753 589 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC115085.1-201ENST00000588924 229 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 VN1R84P-201ENST00000593697 235 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC119501.1-201ENST00000603646 475 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 CR382285.1-202ENST00000604687 547 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL357078.3-201ENST00000607528 618 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC098614.4-201ENST00000607601 462 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 OR6L2P-201ENST00000608207 925 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL022238.3-201ENST00000609279 443 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC103710.4-201ENST00000609301 899 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 CT45A10-201ENST00000611668 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 XPNPEP3-206ENST00000614001 230 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 MIR6829-201ENST00000620375 67 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL353898.2-201ENST00000623000 255 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AP000648.2-201ENST00000624182 404 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL603839.4-201ENST00000624658 1005 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 SNORA43.5-201ENST00000631270 138 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC233280.20-201ENST00000637412 416 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 MAPK10-244ENST00000639972 2818 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL391380.1-201ENST00000439300 1432 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 KYNUP1-201ENST00000466683 1406 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 NHEJ1-202ENST00000409720 1954 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 SAMMSON-222ENST00000641901 2727 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL121768.1-201ENST00000613917 2544 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC010132.4-201ENST00000569883 1368 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL445250.1-203ENST00000641829 1535 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 UTY-210ENST00000538878 6574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 TMEM75-201ENST00000624314 2165 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 ZNF10-202ENST00000402932 1967 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 TTC9C-202ENST00000316461 1080 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RNU5F-6P-201ENST00000362979 116 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RNU6-1283P-201ENST00000365314 105 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 FABP9-201ENST00000379071 497 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 IGKV6D-41-201ENST00000390271 371 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 TMEM126B-202ENST00000393375 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 FTH1P26-201ENST00000406512 701 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC093642.1-201ENST00000412193 565 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 IFNA12P-201ENST00000413147 571 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RPS6P23-201ENST00000413224 722 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL773545.1-201ENST00000425632 347 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL357632.1-201ENST00000426688 643 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 CENPN-204ENST00000428963 971 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RPL7P56-201ENST00000429441 717 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 EEF1A1P27-201ENST00000429983 1135 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL357552.2-201ENST00000433876 353 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RPS26P40-201ENST00000435209 294 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 SS18L2P1-201ENST00000445923 213 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL161722.1-201ENST00000446972 1032 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 CDC42P2-201ENST00000448566 569 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 PDSS1P2-201ENST00000449397 678 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RPL26P28-201ENST00000451325 435 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC108868.2-201ENST00000451464 511 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RPL26P30-201ENST00000453533 435 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RPL37P3-201ENST00000456825 293 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 LINC00489-201ENST00000457816 543 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RN7SL180P-201ENST00000466769 294 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 ABHD10-204ENST00000494817 801 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC084871.2-201ENST00000503355 464 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC025674.1-201ENST00000507074 324 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RNU6-202P-201ENST00000515998 96 ntBASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms