Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS39Q96JC1 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 RNU6-1320P-201ENST00000390838 107 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 RNU6-1269P-201ENST00000391139 107 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 OR7E116P-201ENST00000448529 957 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 RPS23P9-201ENST00000448848 438 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 RNU6-599P-201ENST00000459383 107 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 RNU6-1193P-201ENST00000459461 107 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 AC122718.2-201ENST00000505325 591 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 AC018797.1-201ENST00000510791 255 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 GAPDHP62-201ENST00000515313 990 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 AC021146.10-201ENST00000515628 706 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 RN7SKP183-201ENST00000517169 324 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS39Q96JC1 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 AC009962.1-201ENST00000567327 3813 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 AC124916.2-201ENST00000604416 224 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 AL035661.1-201ENST00000620459 1144 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 RNU6-368P-201ENST00000620928 107 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 MIR6806-201ENST00000622141 64 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 RNU6-538P-201ENST00000622329 107 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 AC005618.4-201ENST00000625053 554 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 AP001052.1-201ENST00000626421 99 ntBASIC5.76□□□□□ -1.49
VPS39Q96JC1 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS39Q96JC1 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS39Q96JC1 AP005435.3-201ENST00000531260 3198 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS39Q96JC1 RNU1-146P-201ENST00000364015 165 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 AL354890.1-201ENST00000413730 346 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 AL158827.1-201ENST00000416300 391 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 AC096644.3-201ENST00000416788 338 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 PNKDP1-201ENST00000435914 430 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 AL138787.1-202ENST00000437804 898 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 AC118758.1-202ENST00000454719 225 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 Z83838.1-202ENST00000456225 839 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 AC093166.4-201ENST00000457867 318 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 DEFB109A-201ENST00000482450 265 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 AC021006.1-201ENST00000489849 553 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 SCARNA18.1-201ENST00000516330 83 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 RN7SKP238-201ENST00000516483 249 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS39Q96JC1 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 MIR4776-2-201ENST00000580204 80 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 AC006840.1-201ENST00000623069 542 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS39Q96JC1 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS39Q96JC1 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 CASC19-260ENST00000641828 2001 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS39Q96JC1 TTC39DP-201ENST00000416781 1688 ntBASIC5.75□□□□□ -1.49
VPS39Q96JC1 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS39Q96JC1 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS39Q96JC1 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS39Q96JC1 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS39Q96JC1 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS39Q96JC1 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS39Q96JC1 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 THAP12P8-201ENST00000447914 2115 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC093671.1-201ENST00000624981 2929 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS39Q96JC1 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 MIR1275-201ENST00000408770 80 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC138761.5-201ENST00000433967 325 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 RPS23P2-201ENST00000463671 415 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC074255.1-201ENST00000511259 501 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC130364.2-201ENST00000528639 604 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms