Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PPIAP19-201ENST00000486414 492 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 RPL32P33-201ENST00000487023 394 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AC009120.1-201ENST00000493458 473 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.57□□□□□ -1.52
SHMT2P34897 KATNBL1P4-201ENST00000503545 918 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.57□□□□□ -1.52
SHMT2P34897 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.57□□□□□ -1.52
SHMT2P34897 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.57□□□□□ -1.52
SHMT2P34897 AP000619.2-201ENST00000546014 969 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.57□□□□□ -1.52
SHMT2P34897 AC096996.1-201ENST00000563813 325 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.57□□□□□ -1.52
SHMT2P34897 MIR3614-201ENST00000581261 86 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.57□□□□□ -1.52
SHMT2P34897 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.57□□□□□ -1.52
SHMT2P34897 AL513327.3-201ENST00000602618 469 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AC026124.2-201ENST00000621847 656 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC5.57□□□□□ -1.52
SHMT2P34897 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
SHMT2P34897 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.57□□□□□ -1.52
SHMT2P34897 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.56□□□□□ -1.52
SHMT2P34897 AC011933.2-201ENST00000578539 2790 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 TMSB4XP4-201ENST00000323496 618 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 RNA5SP435-201ENST00000364044 108 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 SNORA17A-201ENST00000391185 133 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 RNA5SP178-201ENST00000410380 128 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 CDY17P-201ENST00000414121 1282 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 NIFKP3-201ENST00000417799 865 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.56□□□□□ -1.52
SHMT2P34897 RPS27AP6-201ENST00000427962 448 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AC138761.5-201ENST00000433967 325 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 HMGN1P36-201ENST00000446623 298 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.56□□□□□ -1.52
SHMT2P34897 RPSAP37-201ENST00000470913 821 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 RPS3AP15-201ENST00000483874 781 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC5.56□□□□□ -1.52
SHMT2P34897 AC109481.1-201ENST00000509173 282 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.56□□□□□ -1.52
SHMT2P34897 MTATP6P1-201ENST00000514057 681 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AC111000.6-201ENST00000514471 709 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AC112191.2-201ENST00000522428 333 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.56□□□□□ -1.52
SHMT2P34897 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
SHMT2P34897 AC010547.6-201ENST00000571789 193 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.56□□□□□ -1.52
SHMT2P34897 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.56□□□□□ -1.52
SHMT2P34897 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 AL133481.2-203ENST00000607558 139 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AC244517.3-201ENST00000616254 1235 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AL390318.1-201ENST00000624564 687 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 SNORA17.5-201ENST00000630429 132 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 MFSD8-239ENST00000641590 2479 ntBASIC5.56□□□□□ -1.52
SHMT2P34897 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
SHMT2P34897 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.56□□□□□ -1.52
SHMT2P34897 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
SHMT2P34897 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SHMT2P34897 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
SHMT2P34897 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SHMT2P34897 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SHMT2P34897 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.55□□□□□ -1.52
SHMT2P34897 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.55□□□□□ -1.52
SHMT2P34897 AL159987.1-201ENST00000347911 293 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 RNA5SP394-201ENST00000364216 119 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 RN7SKP186-201ENST00000365371 303 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SHMT2P34897 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SHMT2P34897 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.55□□□□□ -1.52
SHMT2P34897 RN7SKP286-201ENST00000410894 299 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.55□□□□□ -1.52
SHMT2P34897 AC064862.4-201ENST00000442180 334 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 AL161636.2-201ENST00000445179 927 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms