Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC7.33□□□□□ -1.24
HOXC9P31274 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
HOXC9P31274 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
HOXC9P31274 CR1-203ENST00000367051 7469 ntTSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 RNU1-149P-201ENST00000390870 161 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 RPL23AP17-201ENST00000401064 499 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 RPSAP35-201ENST00000413753 818 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 RNF10P1-201ENST00000418589 369 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
HOXC9P31274 RPL7P61-201ENST00000451721 751 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC7.33□□□□□ -1.24
HOXC9P31274 RPL35AP28-201ENST00000459730 331 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 HMGB1P44-201ENST00000508597 572 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 NMNAT1P5-201ENST00000559657 841 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC7.33□□□□□ -1.24
HOXC9P31274 AC006116.3-201ENST00000592968 361 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 AP002884.5-201ENST00000595053 1132 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 Mico1.1-201ENST00000611698 204 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 CYP4F35P-202ENST00000636121 390 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 UGP2-232ENST00000640075 567 ntTSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 LINC01739-205ENST00000641890 573 ntBASIC7.33□□□□□ -1.24
HOXC9P31274 MAK-202ENST00000354489 3941 ntTSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC7.33□□□□□ -1.24
HOXC9P31274 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC7.33□□□□□ -1.24
HOXC9P31274 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
HOXC9P31274 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
HOXC9P31274 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC7.32□□□□□ -1.24
HOXC9P31274 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
HOXC9P31274 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC7.32□□□□□ -1.24
HOXC9P31274 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC7.32□□□□□ -1.24
HOXC9P31274 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
HOXC9P31274 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
HOXC9P31274 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
HOXC9P31274 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC7.32□□□□□ -1.24
HOXC9P31274 AC013268.3-201ENST00000262716 2324 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
HOXC9P31274 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
HOXC9P31274 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
HOXC9P31274 RNU1-136P-201ENST00000384181 164 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 MIR550A3-201ENST00000390735 95 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC7.32□□□□□ -1.24
HOXC9P31274 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC7.32□□□□□ -1.24
HOXC9P31274 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC7.32□□□□□ -1.24
HOXC9P31274 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.32□□□□□ -1.24
HOXC9P31274 RNGTTP1-201ENST00000420965 728 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 AL355994.1-201ENST00000424379 260 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC7.32□□□□□ -1.24
HOXC9P31274 TMEM183AP1-205ENST00000432739 290 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 GSTM5P1-201ENST00000434751 660 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 AC115223.1-201ENST00000466377 870 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 MTND6P2-201ENST00000512226 524 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC7.32□□□□□ -1.24
HOXC9P31274 AC110775.1-201ENST00000513721 462 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC7.32□□□□□ -1.24
HOXC9P31274 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC7.32□□□□□ -1.24
HOXC9P31274 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC7.32□□□□□ -1.24
HOXC9P31274 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC7.32□□□□□ -1.24
HOXC9P31274 OR8G3P-201ENST00000533406 921 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC7.32□□□□□ -1.24
HOXC9P31274 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC7.32□□□□□ -1.24
HOXC9P31274 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC7.32□□□□□ -1.24
HOXC9P31274 AP005403.1-201ENST00000579720 229 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC7.32□□□□□ -1.24
HOXC9P31274 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
HOXC9P31274 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC7.32□□□□□ -1.24
HOXC9P31274 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
HOXC9P31274 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC7.32□□□□□ -1.24
HOXC9P31274 ZNF733P-202ENST00000444809 1573 ntBASIC7.32□□□□□ -1.24
HOXC9P31274 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
HOXC9P31274 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
HOXC9P31274 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC7.32□□□□□ -1.24
HOXC9P31274 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
HOXC9P31274 AC016251.2-201ENST00000623393 3089 ntBASIC7.31□□□□□ -1.24
HOXC9P31274 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC7.31□□□□□ -1.24
HOXC9P31274 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC7.31□□□□□ -1.24
HOXC9P31274 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
HOXC9P31274 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
HOXC9P31274 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
HOXC9P31274 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
HOXC9P31274 AL121977.1-201ENST00000401636 979 ntBASIC7.31□□□□□ -1.24
HOXC9P31274 AL133270.1-201ENST00000402635 279 ntBASIC7.31□□□□□ -1.24
HOXC9P31274 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC7.31□□□□□ -1.24
HOXC9P31274 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC7.31□□□□□ -1.24
HOXC9P31274 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC7.31□□□□□ -1.24
HOXC9P31274 RPS23P1-201ENST00000491662 432 ntBASIC7.31□□□□□ -1.24
HOXC9P31274 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC7.31□□□□□ -1.24
HOXC9P31274 IGHVIII-76-1-201ENST00000523776 286 ntBASIC7.31□□□□□ -1.24
HOXC9P31274 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC7.31□□□□□ -1.24
HOXC9P31274 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
HOXC9P31274 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
HOXC9P31274 AC110716.2-201ENST00000563865 3945 ntBASIC7.31□□□□□ -1.24
HOXC9P31274 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
HOXC9P31274 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 206.2 ms