Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-379P-201ENST00000363813 104 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 RNA5SP141-201ENST00000364543 120 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 RNU6-1026P-201ENST00000384465 108 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 AL451048.1-201ENST00000413328 217 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 NDUFB4P5-201ENST00000415445 361 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AC003071.2-201ENST00000423857 315 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 RPS7P14-201ENST00000426405 583 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 AC123904.1-201ENST00000441072 368 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 NUTF2P4-201ENST00000458353 381 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 RN7SL790P-201ENST00000474043 298 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 RN7SL549P-201ENST00000478997 282 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC8.32□□□□□ -1.08
COL9A1P20849 AC138356.2-201ENST00000521192 667 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 RBMS2P1-201ENST00000525031 1226 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 SRSF5-206ENST00000554021 567 ntTSL 4 BASIC8.32□□□□□ -1.08
COL9A1P20849 COX6CP11-201ENST00000555293 229 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC8.32□□□□□ -1.08
COL9A1P20849 MT1B-202ENST00000562399 351 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 TAPT1-AS1-203ENST00000573950 510 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC8.32□□□□□ -1.08
COL9A1P20849 RN7SL32P-201ENST00000580514 281 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AC005357.1-201ENST00000588399 301 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC8.32□□□□□ -1.08
COL9A1P20849 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 AC012510.1-201ENST00000607946 759 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AC004696.1-201ENST00000614345 607 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 MIR7150-201ENST00000614393 94 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AC008115.3-201ENST00000614874 549 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 RN7SL301P-202ENST00000618767 298 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AC009318.4-201ENST00000620496 486 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC8.32□□□□□ -1.08
COL9A1P20849 TEX46-203ENST00000622840 479 ntAPPRIS ALT2 TSL 5 BASIC8.32□□□□□ -1.08
COL9A1P20849 NRP1-207ENST00000374875 5407 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 AC089998.1-201ENST00000548575 3141 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 LIPH-201ENST00000296252 4026 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 KATNAL2-201ENST00000245121 2833 ntAPPRIS P2 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 PDLIM5-222ENST00000615540 6219 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 PPBPP2-201ENST00000513150 1362 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 CLSTN2-AS1-201ENST00000513309 2693 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 LDAH-201ENST00000237822 2907 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 AC093297.3-201ENST00000607056 2517 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 SLC12A1-203ENST00000396577 4708 ntAPPRIS ALT1 TSL 5 BASIC8.32□□□□□ -1.08
COL9A1P20849 KLKB1-201ENST00000264690 2363 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
COL9A1P20849 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
COL9A1P20849 ZNF259P1-202ENST00000572422 4912 ntBASIC8.32□□□□□ -1.08
COL9A1P20849 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC8.31□□□□□ -1.08
COL9A1P20849 CEP95-201ENST00000553412 2492 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 NOLC1-202ENST00000405356 3967 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 FRG2-201ENST00000378763 2084 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 FRG2B-202ENST00000443774 2094 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 SLC22A9-201ENST00000279178 2343 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 RCAN1-205ENST00000443408 2315 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 ASB15-202ENST00000434204 2817 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 MRAS-211ENST00000621127 3801 ntTSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 PBLD-202ENST00000309049 2165 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 AC096992.2-201ENST00000609553 1684 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 TBC1D8B-201ENST00000276175 3538 ntAPPRIS ALT1 TSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 CAGE1-208ENST00000512086 2537 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 ELF4-204ENST00000615377 3878 ntTSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 SCMH1-205ENST00000372595 3231 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 CADM1-203ENST00000452722 8588 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 STON2-201ENST00000267540 2977 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 NACAP2-201ENST00000318548 624 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 Y_RNA.176-201ENST00000363815 109 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 SYT14-202ENST00000367019 2997 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
COL9A1P20849 RNU6-308P-201ENST00000390957 107 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 ARSFP1-201ENST00000398758 477 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC8.31□□□□□ -1.08
COL9A1P20849 OR51A3P-201ENST00000413596 924 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC8.31□□□□□ -1.08
COL9A1P20849 AC096570.1-201ENST00000419013 569 ntTSL 4 BASIC8.31□□□□□ -1.08
COL9A1P20849 AL359633.1-201ENST00000421403 310 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC8.31□□□□□ -1.08
COL9A1P20849 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC8.31□□□□□ -1.08
COL9A1P20849 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC8.31□□□□□ -1.08
COL9A1P20849 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 AL137792.2-201ENST00000443484 235 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 AC239860.1-201ENST00000444680 1270 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 AC080129.1-201ENST00000457815 406 ntTSL 3 BASIC8.31□□□□□ -1.08
COL9A1P20849 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC8.31□□□□□ -1.08
COL9A1P20849 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 AC098818.1-201ENST00000478593 252 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 RN7SL464P-201ENST00000492743 297 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC8.31□□□□□ -1.08
COL9A1P20849 MTCO1P29-201ENST00000496868 288 ntBASIC8.31□□□□□ -1.08
COL9A1P20849 AC025674.1-201ENST00000507074 324 ntBASIC8.31□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms