Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AP003400.6-201ENST00000624698 740 ntBASIC5.75□□□□□ -1.49
MSH3P20585 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 MFSD8-219ENST00000641228 2559 ntBASIC5.75□□□□□ -1.49
MSH3P20585 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
MSH3P20585 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
MSH3P20585 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 AC117409.1-201ENST00000470499 1310 ntBASIC5.74□□□□□ -1.49
MSH3P20585 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 BCORP1-203ENST00000513194 5093 ntBASIC5.74□□□□□ -1.49
MSH3P20585 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.74□□□□□ -1.49
MSH3P20585 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.74□□□□□ -1.49
MSH3P20585 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.74□□□□□ -1.49
MSH3P20585 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
MSH3P20585 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 OR52B3P-201ENST00000314715 928 ntBASIC5.74□□□□□ -1.49
MSH3P20585 OR56A4-201ENST00000330728 1209 ntBASIC5.74□□□□□ -1.49
MSH3P20585 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
MSH3P20585 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH3P20585 MTND3P20-201ENST00000407663 186 ntBASIC5.74□□□□□ -1.49
MSH3P20585 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
MSH3P20585 RN7SKP279-201ENST00000411383 298 ntBASIC5.74□□□□□ -1.49
MSH3P20585 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH3P20585 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH3P20585 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH3P20585 IPPKP1-201ENST00000422501 768 ntBASIC5.74□□□□□ -1.49
MSH3P20585 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.74□□□□□ -1.49
MSH3P20585 CRIP1P1-201ENST00000427567 185 ntBASIC5.74□□□□□ -1.49
MSH3P20585 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH3P20585 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH3P20585 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH3P20585 AC090589.1-201ENST00000473109 362 ntBASIC5.74□□□□□ -1.49
MSH3P20585 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH3P20585 SNORA70.20-201ENST00000516848 126 ntBASIC5.74□□□□□ -1.49
MSH3P20585 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 AC078878.1-201ENST00000539832 958 ntBASIC5.74□□□□□ -1.49
MSH3P20585 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.74□□□□□ -1.49
MSH3P20585 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.74□□□□□ -1.49
MSH3P20585 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.74□□□□□ -1.49
MSH3P20585 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 AL133481.2-203ENST00000607558 139 ntBASIC5.74□□□□□ -1.49
MSH3P20585 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.74□□□□□ -1.49
MSH3P20585 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
MSH3P20585 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 AL355834.1-201ENST00000556602 3965 ntBASIC5.74□□□□□ -1.49
MSH3P20585 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.74□□□□□ -1.49
MSH3P20585 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
MSH3P20585 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.74□□□□□ -1.49
MSH3P20585 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.73□□□□□ -1.49
MSH3P20585 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.73□□□□□ -1.49
MSH3P20585 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
MSH3P20585 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.73□□□□□ -1.49
MSH3P20585 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.73□□□□□ -1.49
MSH3P20585 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
MSH3P20585 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSH3P20585 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
MSH3P20585 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSH3P20585 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 OR7E101P-201ENST00000400428 513 ntBASIC5.73□□□□□ -1.49
MSH3P20585 LYPLA1P3-201ENST00000402650 695 ntBASIC5.73□□□□□ -1.49
MSH3P20585 RPS3AP2-201ENST00000407190 754 ntBASIC5.73□□□□□ -1.49
MSH3P20585 GAPDHP34-201ENST00000432112 823 ntBASIC5.73□□□□□ -1.49
MSH3P20585 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.73□□□□□ -1.49
MSH3P20585 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.73□□□□□ -1.49
MSH3P20585 AC004129.2-201ENST00000457229 287 ntBASIC5.73□□□□□ -1.49
MSH3P20585 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.73□□□□□ -1.49
MSH3P20585 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.73□□□□□ -1.49
MSH3P20585 AC105384.2-201ENST00000508433 640 ntBASIC5.73□□□□□ -1.49
MSH3P20585 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.73□□□□□ -1.49
MSH3P20585 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.73□□□□□ -1.49
MSH3P20585 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.73□□□□□ -1.49
MSH3P20585 IGKV2-4-201ENST00000523070 340 ntBASIC5.73□□□□□ -1.49
MSH3P20585 AC087272.1-201ENST00000523624 533 ntBASIC5.73□□□□□ -1.49
MSH3P20585 IGLV3-30-201ENST00000524362 298 ntBASIC5.73□□□□□ -1.49
MSH3P20585 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
MSH3P20585 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.73□□□□□ -1.49
MSH3P20585 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
MSH3P20585 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.73□□□□□ -1.49
MSH3P20585 NPM1P5-201ENST00000557228 838 ntBASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms