Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC060775.1-201ENST00000518241 520 ntBASIC5.32□□□□□ -1.56
SDC1P18827 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC5.32□□□□□ -1.56
SDC1P18827 OR5D2P-201ENST00000524390 911 ntBASIC5.32□□□□□ -1.56
SDC1P18827 TRIM51DP-201ENST00000529746 596 ntBASIC5.32□□□□□ -1.56
SDC1P18827 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SDC1P18827 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.32□□□□□ -1.56
SDC1P18827 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SDC1P18827 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.32□□□□□ -1.56
SDC1P18827 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.32□□□□□ -1.56
SDC1P18827 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.32□□□□□ -1.56
SDC1P18827 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.32□□□□□ -1.56
SDC1P18827 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.32□□□□□ -1.56
SDC1P18827 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SDC1P18827 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SDC1P18827 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.32□□□□□ -1.56
SDC1P18827 RN7SL544P-201ENST00000617232 284 ntBASIC5.32□□□□□ -1.56
SDC1P18827 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.32□□□□□ -1.56
SDC1P18827 RN7SL763P-201ENST00000620922 284 ntBASIC5.32□□□□□ -1.56
SDC1P18827 AL596275.2-207ENST00000641188 675 ntBASIC5.32□□□□□ -1.56
SDC1P18827 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
SDC1P18827 MRE11P1-201ENST00000464884 2127 ntBASIC5.32□□□□□ -1.56
SDC1P18827 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.32□□□□□ -1.56
SDC1P18827 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SDC1P18827 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDC1P18827 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDC1P18827 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
SDC1P18827 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDC1P18827 CR383656.5-201ENST00000547616 1340 ntBASIC5.31□□□□□ -1.56
SDC1P18827 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDC1P18827 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SDC1P18827 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SDC1P18827 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SDC1P18827 AL009179.1-201ENST00000406085 265 ntBASIC5.31□□□□□ -1.56
SDC1P18827 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC5.31□□□□□ -1.56
SDC1P18827 GPS2P1-201ENST00000411761 986 ntBASIC5.31□□□□□ -1.56
SDC1P18827 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.31□□□□□ -1.56
SDC1P18827 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.31□□□□□ -1.56
SDC1P18827 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.31□□□□□ -1.56
SDC1P18827 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.31□□□□□ -1.56
SDC1P18827 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.31□□□□□ -1.56
SDC1P18827 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.31□□□□□ -1.56
SDC1P18827 ACA64.1-201ENST00000459171 127 ntBASIC5.31□□□□□ -1.56
SDC1P18827 PSAT1P4-201ENST00000466500 526 ntBASIC5.31□□□□□ -1.56
SDC1P18827 RN7SL583P-201ENST00000475692 287 ntBASIC5.31□□□□□ -1.56
SDC1P18827 EIF4E2P2-201ENST00000492033 736 ntBASIC5.31□□□□□ -1.56
SDC1P18827 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 MTCO3P42-201ENST00000509488 518 ntBASIC5.31□□□□□ -1.56
SDC1P18827 AC091912.1-201ENST00000511351 248 ntBASIC5.31□□□□□ -1.56
SDC1P18827 MTCO3P39-201ENST00000514812 518 ntBASIC5.31□□□□□ -1.56
SDC1P18827 SNORA70.20-201ENST00000516848 126 ntBASIC5.31□□□□□ -1.56
SDC1P18827 MRPS16P1-201ENST00000523462 412 ntBASIC5.31□□□□□ -1.56
SDC1P18827 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.31□□□□□ -1.56
SDC1P18827 AC079064.1-201ENST00000528365 362 ntBASIC5.31□□□□□ -1.56
SDC1P18827 HMGB1P42-201ENST00000532126 553 ntBASIC5.31□□□□□ -1.56
SDC1P18827 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.31□□□□□ -1.56
SDC1P18827 AC092121.1-201ENST00000569452 202 ntBASIC5.31□□□□□ -1.56
SDC1P18827 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 H3F3BP2-201ENST00000583907 357 ntBASIC5.31□□□□□ -1.56
SDC1P18827 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.31□□□□□ -1.56
SDC1P18827 FO681491.1-202ENST00000623392 737 ntBASIC5.31□□□□□ -1.56
SDC1P18827 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SDC1P18827 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SDC1P18827 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SDC1P18827 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SDC1P18827 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.31□□□□□ -1.56
SDC1P18827 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SDC1P18827 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SDC1P18827 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SDC1P18827 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDC1P18827 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDC1P18827 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.31□□□□□ -1.56
SDC1P18827 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SDC1P18827 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDC1P18827 NEPNP-201ENST00000404786 1371 ntBASIC5.3□□□□□ -1.56
SDC1P18827 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.3□□□□□ -1.56
SDC1P18827 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
SDC1P18827 MIPEPP2-201ENST00000422560 1819 ntBASIC5.3□□□□□ -1.56
SDC1P18827 MT-RNR2-201ENST00000387347 1559 ntBASIC5.3□□□□□ -1.56
SDC1P18827 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SDC1P18827 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
SDC1P18827 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SDC1P18827 RN7SKP275-201ENST00000364626 301 ntBASIC5.3□□□□□ -1.56
SDC1P18827 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SDC1P18827 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.3□□□□□ -1.56
SDC1P18827 AC007161.1-204ENST00000423039 460 ntBASIC5.3□□□□□ -1.56
SDC1P18827 HLA-DPA3-207ENST00000454398 229 ntBASIC5.3□□□□□ -1.56
SDC1P18827 TAAR4P-201ENST00000454843 1039 ntBASIC5.3□□□□□ -1.56
SDC1P18827 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.3□□□□□ -1.56
SDC1P18827 RPL5P16-201ENST00000471467 790 ntBASIC5.3□□□□□ -1.56
SDC1P18827 AC087672.1-201ENST00000479876 766 ntBASIC5.3□□□□□ -1.56
SDC1P18827 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.3□□□□□ -1.56
SDC1P18827 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms