Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
SHANK3Q9BYB0 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.28
SHANK3Q9BYB0 AL353796.1-201ENST00000561542 3241 ntBASIC7.09□□□□□ -1.28
SHANK3Q9BYB0 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.28
SHANK3Q9BYB0 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.28
SHANK3Q9BYB0 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC7.09□□□□□ -1.28
SHANK3Q9BYB0 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC7.09□□□□□ -1.28
SHANK3Q9BYB0 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
SHANK3Q9BYB0 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
SHANK3Q9BYB0 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 CASC19-281ENST00000642118 1554 ntBASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 AC009948.3-201ENST00000603415 1798 ntBASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 IQCB2P-201ENST00000401788 1633 ntBASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 UBE2Q2P10-201ENST00000514854 900 ntBASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 MTCO1P1-201ENST00000624263 1081 ntBASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
SHANK3Q9BYB0 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 RPL32P3-201ENST00000359025 275 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 RNA5SP505-201ENST00000364748 108 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 DDX39BP1-205ENST00000422507 192 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 GSTM5P1-201ENST00000434751 660 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AL451063.1-201ENST00000450164 1133 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 NUTF2P7-201ENST00000453086 375 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AL353729.2-201ENST00000605859 1249 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AC012414.7-202ENST00000622705 1090 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 ZNF733P-202ENST00000444809 1573 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AC016745.2-201ENST00000608834 3443 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AC131649.2-201ENST00000624925 4439 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 ZNF365-204ENST00000395251 2695 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AL078621.3-201ENST00000623707 2042 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 INTS6P1-201ENST00000504674 2530 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AC005725.1-201ENST00000577346 2607 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 DNAJA1P4-201ENST00000406473 1166 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 RPL34P20-201ENST00000442771 351 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AL596266.1-201ENST00000448132 400 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 RSU1P1-201ENST00000453416 441 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 RN7SKP147-201ENST00000517154 244 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 IGHVIII-2-1-201ENST00000518843 291 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AC134349.2-201ENST00000535136 910 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 BNIP3P33-201ENST00000598912 569 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 AL353662.3-201ENST00000625131 237 ntBASIC7.07□□□□□ -1.28
SHANK3Q9BYB0 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms