Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC073410.1-201ENST00000435125 589 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 DNAJA1P5-201ENST00000440278 943 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 OR52E7P-201ENST00000452394 933 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 ACA64.1-201ENST00000459171 127 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AL157777.1-201ENST00000468100 304 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC079080.1-201ENST00000479841 822 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC099521.1-201ENST00000482557 334 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 PFN1P8-201ENST00000497012 543 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 GAPDHP71-201ENST00000511530 1003 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC114781.3-201ENST00000512083 142 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 snoU109.5-201ENST00000516231 132 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC068305.2-201ENST00000550567 1205 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC091078.2-201ENST00000557145 559 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AL138895.2-201ENST00000603019 178 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC067773.1-201ENST00000603284 1094 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC103703.1-201ENST00000634783 663 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 AC079776.5-201ENST00000641920 211 ntBASIC5.13□□□□□ -1.59
SKA3Q8IX90 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SKA3Q8IX90 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.13□□□□□ -1.59
SKA3Q8IX90 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AL137141.1-201ENST00000624622 4836 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 MIR621-201ENST00000384919 96 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 RN7SKP29-201ENST00000410957 272 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 BX323845.3-201ENST00000428215 527 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 AC126120.1-201ENST00000431082 470 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 DEFA9P-201ENST00000433042 285 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 PCBP2P1-201ENST00000437262 977 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 AC096775.1-201ENST00000437724 448 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 RNU1-88P-201ENST00000459274 128 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AC006115.2-201ENST00000596823 202 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 FO681491.1-202ENST00000623392 737 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AP004607.3-201ENST00000530354 3915 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 AC004076.2-201ENST00000620532 3323 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 PDZK1P1-202ENST00000425209 1350 ntBASIC5.12□□□□□ -1.59
SKA3Q8IX90 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SKA3Q8IX90 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SKA3Q8IX90 MFSD8-219ENST00000641228 2559 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC114774.1-201ENST00000507410 1770 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms