Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
SCN4AP35499 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
SCN4AP35499 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SCN4AP35499 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SCN4AP35499 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SCN4AP35499 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
SCN4AP35499 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SCN4AP35499 RN7SKP149-201ENST00000363008 344 ntBASIC6.64□□□□□ -1.35
SCN4AP35499 RNU4-2-201ENST00000365668 141 ntBASIC6.64□□□□□ -1.35
SCN4AP35499 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SCN4AP35499 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SCN4AP35499 RN7SKP126-201ENST00000411143 300 ntBASIC6.64□□□□□ -1.35
SCN4AP35499 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC6.64□□□□□ -1.35
SCN4AP35499 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.64□□□□□ -1.35
SCN4AP35499 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.64□□□□□ -1.35
SCN4AP35499 AL603882.1-201ENST00000463059 681 ntBASIC6.64□□□□□ -1.35
SCN4AP35499 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.64□□□□□ -1.35
SCN4AP35499 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.64□□□□□ -1.35
SCN4AP35499 AL023583.1-201ENST00000607518 1143 ntBASIC6.64□□□□□ -1.35
SCN4AP35499 AC010480.1-201ENST00000624823 684 ntBASIC6.64□□□□□ -1.35
SCN4AP35499 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC6.64□□□□□ -1.35
SCN4AP35499 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.64□□□□□ -1.35
SCN4AP35499 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SCN4AP35499 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC6.64□□□□□ -1.35
SCN4AP35499 AC119674.1-213ENST00000641177 1386 ntBASIC6.63□□□□□ -1.35
SCN4AP35499 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SCN4AP35499 RNU1-32P-201ENST00000363937 159 ntBASIC6.63□□□□□ -1.35
SCN4AP35499 RNA5SP505-201ENST00000364748 108 ntBASIC6.63□□□□□ -1.35
SCN4AP35499 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.63□□□□□ -1.35
SCN4AP35499 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.63□□□□□ -1.35
SCN4AP35499 AL672138.1-201ENST00000450604 1015 ntBASIC6.63□□□□□ -1.35
SCN4AP35499 RPL7L1P3-201ENST00000455249 689 ntBASIC6.63□□□□□ -1.35
SCN4AP35499 AC092490.3-201ENST00000545370 572 ntBASIC6.63□□□□□ -1.35
SCN4AP35499 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.63□□□□□ -1.35
SCN4AP35499 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.63□□□□□ -1.35
SCN4AP35499 AC011447.4-201ENST00000587562 111 ntBASIC6.63□□□□□ -1.35
SCN4AP35499 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.63□□□□□ -1.35
SCN4AP35499 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SCN4AP35499 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
SCN4AP35499 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
SCN4AP35499 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SCN4AP35499 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SCN4AP35499 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SCN4AP35499 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SCN4AP35499 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
SCN4AP35499 AC009962.1-201ENST00000567327 3813 ntBASIC6.63□□□□□ -1.35
SCN4AP35499 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SCN4AP35499 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
SCN4AP35499 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
SCN4AP35499 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
SCN4AP35499 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SCN4AP35499 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.62□□□□□ -1.35
SCN4AP35499 SNX18P3-202ENST00000565670 1750 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
SCN4AP35499 OR55B1P-203ENST00000641518 2602 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SCN4AP35499 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.62□□□□□ -1.35
SCN4AP35499 RN7SKP95-201ENST00000362860 303 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.62□□□□□ -1.35
SCN4AP35499 COX6B1P1-201ENST00000415962 213 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 AC015977.1-201ENST00000418887 292 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.62□□□□□ -1.35
SCN4AP35499 AC068587.1-201ENST00000483613 781 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.62□□□□□ -1.35
SCN4AP35499 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC6.62□□□□□ -1.35
SCN4AP35499 HMGB1P44-201ENST00000508597 572 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC6.62□□□□□ -1.35
SCN4AP35499 EIF3KP3-201ENST00000514461 639 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 IGLV3-24-201ENST00000517477 197 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC6.62□□□□□ -1.35
SCN4AP35499 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.62□□□□□ -1.35
SCN4AP35499 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.62□□□□□ -1.35
SCN4AP35499 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.62□□□□□ -1.35
SCN4AP35499 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.62□□□□□ -1.35
SCN4AP35499 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.62□□□□□ -1.35
SCN4AP35499 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SCN4AP35499 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.62□□□□□ -1.35
SCN4AP35499 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
SCN4AP35499 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SCN4AP35499 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
SCN4AP35499 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SCN4AP35499 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC6.62□□□□□ -1.35
SCN4AP35499 AL033543.1-201ENST00000623440 13454 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC6.62□□□□□ -1.35
SCN4AP35499 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
SCN4AP35499 SNURFL-201ENST00000309296 343 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
SCN4AP35499 AC126755.2-208ENST00000327792 462 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 AC138969.1-213ENST00000331436 462 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 RN7SKP6-201ENST00000364795 319 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 COX6CP17-201ENST00000421389 185 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 AC008072.1-201ENST00000434254 824 ntBASIC6.62□□□□□ -1.35
SCN4AP35499 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SCN4AP35499 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.62□□□□□ -1.35
SCN4AP35499 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC6.62□□□□□ -1.35
SCN4AP35499 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.62□□□□□ -1.35
SCN4AP35499 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC6.62□□□□□ -1.35
SCN4AP35499 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.62□□□□□ -1.35
SCN4AP35499 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC6.62□□□□□ -1.35
SCN4AP35499 AC074101.1-201ENST00000637861 241 ntBASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms