Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.77□□□□□ -1.49
MSH3P20585 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.76□□□□□ -1.49
MSH3P20585 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH3P20585 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.76□□□□□ -1.49
MSH3P20585 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
MSH3P20585 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.76□□□□□ -1.49
MSH3P20585 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 RPL11P3-201ENST00000395256 523 ntBASIC5.76□□□□□ -1.49
MSH3P20585 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
MSH3P20585 MRPL53P1-201ENST00000414323 319 ntBASIC5.76□□□□□ -1.49
MSH3P20585 AK4P4-201ENST00000419465 646 ntBASIC5.76□□□□□ -1.49
MSH3P20585 AC019205.1-201ENST00000421830 730 ntBASIC5.76□□□□□ -1.49
MSH3P20585 HMGB1P32-201ENST00000425971 565 ntBASIC5.76□□□□□ -1.49
MSH3P20585 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.76□□□□□ -1.49
MSH3P20585 AC015983.1-201ENST00000441577 373 ntBASIC5.76□□□□□ -1.49
MSH3P20585 BTBD7P2-201ENST00000441962 620 ntBASIC5.76□□□□□ -1.49
MSH3P20585 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.76□□□□□ -1.49
MSH3P20585 AP006222.1-205ENST00000450734 457 ntBASIC5.76□□□□□ -1.49
MSH3P20585 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.76□□□□□ -1.49
MSH3P20585 AC117394.1-201ENST00000477323 567 ntBASIC5.76□□□□□ -1.49
MSH3P20585 AC006539.1-201ENST00000481419 501 ntBASIC5.76□□□□□ -1.49
MSH3P20585 AL133372.1-201ENST00000493565 745 ntBASIC5.76□□□□□ -1.49
MSH3P20585 AC147055.1-201ENST00000509261 750 ntBASIC5.76□□□□□ -1.49
MSH3P20585 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.76□□□□□ -1.49
MSH3P20585 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.76□□□□□ -1.49
MSH3P20585 AC078899.1-201ENST00000521432 1185 ntBASIC5.76□□□□□ -1.49
MSH3P20585 AC136777.2-201ENST00000522979 358 ntBASIC5.76□□□□□ -1.49
MSH3P20585 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH3P20585 HMGN2P36-201ENST00000529541 409 ntBASIC5.76□□□□□ -1.49
MSH3P20585 NANOGNBP2-201ENST00000544753 553 ntBASIC5.76□□□□□ -1.49
MSH3P20585 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.76□□□□□ -1.49
MSH3P20585 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH3P20585 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.76□□□□□ -1.49
MSH3P20585 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH3P20585 AC025857.2-201ENST00000602711 238 ntBASIC5.76□□□□□ -1.49
MSH3P20585 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH3P20585 AC016911.1-201ENST00000613297 452 ntBASIC5.76□□□□□ -1.49
MSH3P20585 MIR6861-201ENST00000618657 64 ntBASIC5.76□□□□□ -1.49
MSH3P20585 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.76□□□□□ -1.49
MSH3P20585 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 AC016745.2-201ENST00000608834 3443 ntBASIC5.76□□□□□ -1.49
MSH3P20585 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH3P20585 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH3P20585 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.76□□□□□ -1.49
MSH3P20585 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSH3P20585 AC009962.1-201ENST00000567327 3813 ntBASIC5.76□□□□□ -1.49
MSH3P20585 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 AL161912.4-201ENST00000623889 2468 ntBASIC5.75□□□□□ -1.49
MSH3P20585 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
MSH3P20585 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 TET1P1-201ENST00000426627 2301 ntBASIC5.75□□□□□ -1.49
MSH3P20585 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
MSH3P20585 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
MSH3P20585 RNU1-150P-201ENST00000362491 162 ntBASIC5.75□□□□□ -1.49
MSH3P20585 RNA5SP500-201ENST00000364486 119 ntBASIC5.75□□□□□ -1.49
MSH3P20585 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSH3P20585 AC245060.4-201ENST00000413293 1121 ntBASIC5.75□□□□□ -1.49
MSH3P20585 SLC20A1P1-201ENST00000413906 956 ntBASIC5.75□□□□□ -1.49
MSH3P20585 METTL15P3-201ENST00000415522 1221 ntBASIC5.75□□□□□ -1.49
MSH3P20585 DPPA2P2-201ENST00000418220 897 ntBASIC5.75□□□□□ -1.49
MSH3P20585 RPS3P2-201ENST00000421346 701 ntBASIC5.75□□□□□ -1.49
MSH3P20585 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC5.75□□□□□ -1.49
MSH3P20585 FAM204CP-201ENST00000424489 642 ntBASIC5.75□□□□□ -1.49
MSH3P20585 BX119904.3-201ENST00000428194 957 ntBASIC5.75□□□□□ -1.49
MSH3P20585 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.75□□□□□ -1.49
MSH3P20585 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.75□□□□□ -1.49
MSH3P20585 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.75□□□□□ -1.49
MSH3P20585 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.75□□□□□ -1.49
MSH3P20585 FRG2FP-204ENST00000453982 852 ntBASIC5.75□□□□□ -1.49
MSH3P20585 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.75□□□□□ -1.49
MSH3P20585 AC011476.1-201ENST00000466725 307 ntBASIC5.75□□□□□ -1.49
MSH3P20585 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.75□□□□□ -1.49
MSH3P20585 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.75□□□□□ -1.49
MSH3P20585 AC025857.1-201ENST00000525252 377 ntBASIC5.75□□□□□ -1.49
MSH3P20585 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.75□□□□□ -1.49
MSH3P20585 AC079600.1-201ENST00000550326 297 ntBASIC5.75□□□□□ -1.49
MSH3P20585 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.75□□□□□ -1.49
MSH3P20585 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.75□□□□□ -1.49
MSH3P20585 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC5.75□□□□□ -1.49
MSH3P20585 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC5.75□□□□□ -1.49
MSH3P20585 LSM1P2-201ENST00000604911 322 ntBASIC5.75□□□□□ -1.49
MSH3P20585 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC5.75□□□□□ -1.49
MSH3P20585 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms