Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AP002371.1-201ENST00000463604 433 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AC022215.1-201ENST00000481770 362 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AC008945.1-201ENST00000505144 499 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AC008638.1-201ENST00000506035 866 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AC138866.2-201ENST00000508650 584 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 RN7SKP248-201ENST00000516278 305 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 SNORD116-30-201ENST00000516468 85 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 SNORA43.3-201ENST00000517240 103 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 OR4A42P-201ENST00000531397 938 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AC119501.1-201ENST00000603646 475 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AC107308.1-201ENST00000615897 301 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AL355377.1-201ENST00000621125 1653 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 RN7SKP29-201ENST00000410957 272 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 BMS1P17-202ENST00000416720 316 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 Z84478.1-201ENST00000438230 1219 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC026348.1-201ENST00000462549 1053 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 RPS23P6-201ENST00000466136 431 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 OR52A4P-203ENST00000498233 1014 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 MORF4L2P1-201ENST00000503761 858 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC113398.2-201ENST00000507630 558 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 CCNHP1-201ENST00000513311 678 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 IGKV2-18-201ENST00000522607 343 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 IGLV3-30-201ENST00000524362 298 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AP001804.1-201ENST00000526868 919 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC016180.1-201ENST00000567945 403 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC145423.1-201ENST00000605712 336 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 AC079395.2-201ENST00000610982 737 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 Z95114.1-201ENST00000624264 14574 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 Z83820.1-201ENST00000456978 1499 ntBASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC3Q9BQI4 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 RNA5SP211-201ENST00000365516 117 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AC015977.1-201ENST00000418887 292 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 CUBNP2-201ENST00000443534 1139 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 SDC4P-201ENST00000453285 601 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AL355032.1-201ENST00000472981 438 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 OR7E157P-201ENST00000494376 911 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 DUTP7-201ENST00000507982 486 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 IGLV2-28-201ENST00000520681 304 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms