Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC008555.2-202ENST00000601776 5302 ntTSL 2 BASIC3.84□□□□□ -1.8
PRKDCP78527 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
PRKDCP78527 LINC02210-213ENST00000591271 9678 ntTSL 3 BASIC3.84□□□□□ -1.8
PRKDCP78527 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
PRKDCP78527 ROBO2-202ENST00000461745 8946 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC3.83□□□□□ -1.8
PRKDCP78527 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 RNA5SP191-201ENST00000362585 102 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 U3.3-201ENST00000362986 216 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 RNA5SP326-201ENST00000363209 110 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 CDC123-202ENST00000378900 933 ntTSL 5 BASIC3.83□□□□□ -1.8
PRKDCP78527 FHP1-201ENST00000442741 703 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC3.83□□□□□ -1.8
PRKDCP78527 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC3.83□□□□□ -1.8
PRKDCP78527 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC3.83□□□□□ -1.8
PRKDCP78527 OR4A2P-201ENST00000527276 913 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
PRKDCP78527 AC069200.1-201ENST00000609511 323 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC3.83□□□□□ -1.8
PRKDCP78527 ST3GAL1-201ENST00000399640 6764 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
PRKDCP78527 AC104964.3-201ENST00000606115 2860 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC3.83□□□□□ -1.8
PRKDCP78527 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
PRKDCP78527 HIP1-201ENST00000336926 8013 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 PHLPP2-206ENST00000568954 8317 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 PBRM1-201ENST00000296302 5145 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 AC114774.1-201ENST00000507410 1770 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 TACC2-210ENST00000369005 9673 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 AL607077.1-201ENST00000401718 499 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.83□□□□□ -1.8
PRKDCP78527 AC006065.1-201ENST00000422539 802 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 AC006967.1-201ENST00000467608 589 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 AC074255.1-201ENST00000511259 501 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC3.83□□□□□ -1.8
PRKDCP78527 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.83□□□□□ -1.8
PRKDCP78527 AL121873.1-201ENST00000616013 524 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC3.83□□□□□ -1.8
PRKDCP78527 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 NCAM2-202ENST00000400546 8135 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 DPY19L1P1-201ENST00000417811 2594 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 SP1-202ENST00000426431 7603 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 DEPDC5-202ENST00000382112 5363 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 SCO1-201ENST00000255390 9612 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 PLAC4-201ENST00000623119 5588 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
PRKDCP78527 VPS13A-205ENST00000376636 11145 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
PRKDCP78527 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC3.83□□□□□ -1.8
PRKDCP78527 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 NOTCH2-201ENST00000256646 11389 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 INSR-202ENST00000341500 8954 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 ZKSCAN1-206ENST00000620510 9192 ntTSL 5 BASIC3.83□□□□□ -1.8
PRKDCP78527 U3.30-201ENST00000391308 210 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC3.83□□□□□ -1.8
PRKDCP78527 OR4C10P-201ENST00000434991 931 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 AL596266.1-201ENST00000448132 400 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC3.83□□□□□ -1.8
PRKDCP78527 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC3.83□□□□□ -1.8
PRKDCP78527 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC3.83□□□□□ -1.8
PRKDCP78527 ZBTB44-205ENST00000525842 9315 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
PRKDCP78527 MT-RNR2-201ENST00000387347 1559 ntBASIC3.83□□□□□ -1.8
PRKDCP78527 ACAN-201ENST00000352105 7526 ntTSL 5 BASIC3.83□□□□□ -1.8
PRKDCP78527 RBM12B-201ENST00000399300 7269 ntAPPRIS P2 TSL 2 BASIC3.82□□□□□ -1.8
PRKDCP78527 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 TNFRSF9-204ENST00000615230 5970 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 KIF24-201ENST00000379174 5729 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 ATM-215ENST00000530958 5718 ntTSL 2 BASIC3.82□□□□□ -1.8
PRKDCP78527 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 AL121886.1-201ENST00000358609 435 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 HSPA8P15-201ENST00000401676 786 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC3.82□□□□□ -1.8
PRKDCP78527 AC011276.1-201ENST00000469688 323 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC3.82□□□□□ -1.8
PRKDCP78527 AC006427.1-201ENST00000514359 712 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC3.82□□□□□ -1.8
PRKDCP78527 AL161756.2-201ENST00000604597 246 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 CBFA2T2-206ENST00000397800 7449 ntTSL 5 BASIC3.82□□□□□ -1.8
PRKDCP78527 COL12A1-201ENST00000322507 11723 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 AC100757.1-201ENST00000616872 1835 ntBASIC3.82□□□□□ -1.8
PRKDCP78527 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PRKDCP78527 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms