Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 GAPDHP24-201ENST00000328713 983 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 RNA5SP326-201ENST00000363209 110 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 RNA5SP242-201ENST00000364171 118 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 RNU1-136P-201ENST00000384181 164 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AL050305.1-201ENST00000399993 1230 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AL512422.1-201ENST00000407033 553 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AC096921.1-201ENST00000411661 375 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 OR2AT2P-201ENST00000413438 905 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 OR6E1P-201ENST00000414424 923 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 CHEK2P5-201ENST00000423877 246 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AL590399.2-201ENST00000427536 309 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 YWHAEP1-201ENST00000453697 763 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AP000547.1-201ENST00000454360 617 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AC023141.9-201ENST00000458734 412 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 RN7SL717P-201ENST00000478343 297 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 RN7SL101P-201ENST00000496350 279 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AC112184.1-201ENST00000505179 312 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 MIR4311-201ENST00000580794 100 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.49
LHX3Q9UBR4 MIPEPP2-201ENST00000422560 1819 ntBASIC5.71□□□□□ -1.49
LHX3Q9UBR4 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
LHX3Q9UBR4 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 RNA5SP435-201ENST00000364044 108 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 RNGTTP1-201ENST00000420965 728 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 NPM1P48-201ENST00000436002 853 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC073909.1-201ENST00000447112 999 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 RN7SL174P-201ENST00000475578 289 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC093719.1-201ENST00000480427 441 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC137627.1-201ENST00000545761 289 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC022404.1-201ENST00000555320 273 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AL049872.1-201ENST00000556323 322 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 SNORD95-201ENST00000579879 68 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 FAM72A-208ENST00000607379 1139 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC008115.3-201ENST00000614874 549 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AC022960.2-201ENST00000616300 666 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 AL158152.1-201ENST00000602652 1435 ntBASIC5.71□□□□□ -1.5
LHX3Q9UBR4 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
LHX3Q9UBR4 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AL078595.2-201ENST00000605309 1780 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.7□□□□□ -1.5
LHX3Q9UBR4 RN7SKP269-201ENST00000365545 319 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AC005042.1-201ENST00000393397 800 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 RN7SKP293-201ENST00000411389 296 ntBASIC5.7□□□□□ -1.5
LHX3Q9UBR4 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 167.4 ms