Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 NENFP1-201ENST00000419476 466 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AC009963.4-201ENST00000448535 339 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 RN7SL168P-201ENST00000463821 279 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 PSAT1P4-201ENST00000466500 526 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AC114781.3-201ENST00000512083 142 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 RNA5SP473-201ENST00000516402 125 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 IGLV3-24-201ENST00000517477 197 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AC060775.1-201ENST00000518241 520 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 OR4A17P-201ENST00000526032 904 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AC068305.2-201ENST00000550567 1205 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 SSXP3-201ENST00000442971 1300 ntBASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 SAMM50P1-201ENST00000455403 1399 ntBASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 AC007938.2-201ENST00000604666 2634 ntBASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
VPS29Q9UBQ0 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 RN7SKP275-201ENST00000364626 301 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AC066692.1-201ENST00000421721 457 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 HMGB3P24-201ENST00000433260 622 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AL512637.1-201ENST00000439523 1231 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AL596266.1-201ENST00000448132 400 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 DUTP7-201ENST00000507982 486 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 RNA5SP439-201ENST00000617595 124 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 FO681491.1-202ENST00000623392 737 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AC025262.3-201ENST00000623666 360 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 NEPNP-201ENST00000404786 1371 ntBASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VPS29Q9UBQ0 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 AC007842.1-201ENST00000597336 2039 ntBASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 AL360270.2-201ENST00000562952 5985 ntBASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 GAPDHP24-201ENST00000328713 983 ntBASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 NPM1P38-201ENST00000403835 865 ntBASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 AL009179.1-201ENST00000406085 265 ntBASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS29Q9UBQ0 RIMKLBP2-201ENST00000424737 654 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms