Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS35Q96QK1 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC100767.2-201ENST00000604840 693 ntBASIC5.78□□□□□ -1.48
VPS35Q96QK1 MIR6861-201ENST00000618657 64 ntBASIC5.78□□□□□ -1.48
VPS35Q96QK1 MAPK10-350ENST00000641777 965 ntBASIC5.78□□□□□ -1.48
VPS35Q96QK1 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS35Q96QK1 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS35Q96QK1 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS35Q96QK1 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 MRPL53P1-201ENST00000414323 319 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 MGAT2P2-201ENST00000427194 797 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 VN1R96P-201ENST00000446052 858 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC135999.1-201ENST00000478962 479 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC006539.1-201ENST00000481419 501 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 NENFP3-201ENST00000503735 313 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 SNORA70.20-201ENST00000516848 126 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC020937.1-201ENST00000519677 1013 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC079600.1-201ENST00000550326 297 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 RNA5SP439-201ENST00000617595 124 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 AC022919.1-201ENST00000624979 626 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 MRRFP1-201ENST00000435941 1675 ntBASIC5.77□□□□□ -1.49
VPS35Q96QK1 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS35Q96QK1 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
VPS35Q96QK1 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 AC245060.4-201ENST00000413293 1121 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 RPS3P2-201ENST00000421346 701 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 NPM1P48-201ENST00000436002 853 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 AL445665.1-202ENST00000452436 324 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 AC004129.2-201ENST00000457229 287 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 RNU7-157P-201ENST00000459600 66 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS35Q96QK1 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 ASNSP4-201ENST00000511103 447 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 AC078899.1-201ENST00000521432 1185 ntBASIC5.76□□□□□ -1.49
VPS35Q96QK1 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.76□□□□□ -1.49
VPS35Q96QK1 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms