Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC013488.1-201ENST00000526618 1838 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
SYNE1Q8NF91 LINC02019-201ENST00000608605 2060 ntBASIC1.77□□□□□ -2.13
SYNE1Q8NF91 HDAC1P2-201ENST00000453661 1398 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 MRM2-202ENST00000407040 582 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 RPL12P3-201ENST00000440080 396 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 CEACAMP10-202ENST00000495431 496 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL645933.2-201ENST00000606743 1207 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 MIR8080-201ENST00000622224 89 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 RNU1-24P-201ENST00000364285 165 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 CNOT7P2-201ENST00000441051 832 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 MRPS21P7-201ENST00000566937 238 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL139407.1-201ENST00000613826 1175 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL592429.1-201ENST00000403909 1473 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 Z80107.2-201ENST00000445127 392 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 IGHVIII-2-1-201ENST00000518843 291 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC079395.2-201ENST00000610982 737 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC091953.3-201ENST00000623220 236 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC129778.1-202ENST00000623812 261 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL591379.1-207ENST00000635982 261 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AMYH02020865.1-205ENST00000636189 261 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 TEK-202ENST00000406359 3935 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC026523.2-201ENST00000625039 7739 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC011369.2-201ENST00000624423 1567 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 DMD-205ENST00000359836 7339 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL589647.1-201ENST00000402485 466 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 ACA64.1-201ENST00000459171 127 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC108161.1-201ENST00000461060 402 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 RPL32P33-201ENST00000487023 394 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 uc_338.18-201ENST00000615451 175 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC004808.2-201ENST00000627965 773 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AP004289.1-201ENST00000436307 2205 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC009804.1-201ENST00000400949 179 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL357752.1-201ENST00000412817 349 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC092865.4-201ENST00000477936 615 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 CDH12P4-201ENST00000517835 295 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 CDH12P3-201ENST00000517935 295 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 CDH12P1-201ENST00000518435 295 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms