Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
HOXA1P49639 FDPSP5-201ENST00000399474 1057 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 RN7SKP151-201ENST00000410230 316 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 AC098592.2-201ENST00000413158 265 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 VN1R31P-201ENST00000417498 730 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 PPIAP23-201ENST00000420099 497 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 AL592114.2-201ENST00000440142 532 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 XKRY2-201ENST00000442362 1093 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 TCEA1P3-201ENST00000443005 880 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXA1P49639 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXA1P49639 AP000942.1-201ENST00000463969 747 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC018635.1-201ENST00000468292 1030 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 RN7SL70P-201ENST00000478322 302 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 RPS10P28-201ENST00000480396 498 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXA1P49639 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXA1P49639 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
HOXA1P49639 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC016550.1-201ENST00000505348 785 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXA1P49639 RNU6-889P-201ENST00000517189 103 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXA1P49639 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXA1P49639 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC027176.2-201ENST00000559166 746 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 AC023968.1-201ENST00000560719 475 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXA1P49639 HMGB1P51-201ENST00000605166 638 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXA1P49639 AL163051.2-201ENST00000618976 735 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC009269.6-201ENST00000621778 588 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC083843.2-201ENST00000568248 6253 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.04□□□□□ -1.6
HOXA1P49639 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
HOXA1P49639 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXA1P49639 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HOXA1P49639 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXA1P49639 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HOXA1P49639 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXA1P49639 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXA1P49639 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXA1P49639 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
HOXA1P49639 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.03□□□□□ -1.6
HOXA1P49639 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXA1P49639 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXA1P49639 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
HOXA1P49639 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXA1P49639 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HOXA1P49639 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
HOXA1P49639 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXA1P49639 SNORA63.3-201ENST00000362682 132 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 RNU6-925P-201ENST00000384629 104 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
HOXA1P49639 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HOXA1P49639 AL445238.1-204ENST00000400311 463 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 RNA5SP487-201ENST00000410186 122 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 RN7SKP205-201ENST00000410999 307 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXA1P49639 TRIM60P17-201ENST00000415181 719 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 RAB9AP4-201ENST00000415230 609 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HOXA1P49639 TRBV29OR9-2-201ENST00000427589 333 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 MTCO1P45-201ENST00000431457 267 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXA1P49639 AC013403.1-201ENST00000436954 263 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 NPM1P33-201ENST00000438918 872 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 RPS10P14-201ENST00000440748 502 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 HMGN1P5-201ENST00000448591 263 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.03□□□□□ -1.6
HOXA1P49639 RPS27AP3-201ENST00000453803 454 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 RBMY2EP-202ENST00000456360 940 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXA1P49639 RANP2-201ENST00000456833 229 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 TPT1P1-201ENST00000458495 518 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXA1P49639 EIF4E2P2-201ENST00000492033 736 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXA1P49639 AC119751.4-201ENST00000507498 357 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 AC008868.1-201ENST00000509786 737 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXA1P49639 VTA1P2-201ENST00000520205 911 ntBASIC5.03□□□□□ -1.6
HOXA1P49639 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms