Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MTCO1P11-201ENST00000429111 1528 ntBASIC7.21□□□□□ -1.26
MSX1P28360 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 NBR1-201ENST00000341165 4656 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.26
MSX1P28360 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC7.21□□□□□ -1.26
MSX1P28360 LAX1-202ENST00000367217 1356 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
MSX1P28360 DAZ2-206ENST00000382440 4119 ntAPPRIS P5 TSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 MYO1B-201ENST00000304164 4933 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
MSX1P28360 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
MSX1P28360 FLG-AS1-202ENST00000392688 2995 ntTSL 2 BASIC7.2□□□□□ -1.26
MSX1P28360 RNPC3-208ENST00000533099 3641 ntAPPRIS P2 TSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 AC022784.6-204ENST00000520390 3442 ntTSL 2 BASIC7.2□□□□□ -1.26
MSX1P28360 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC7.2□□□□□ -1.26
MSX1P28360 TRIM49-202ENST00000532501 1437 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 SCARB2-211ENST00000638603 4284 ntTSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 ITPK1-AS1-201ENST00000553639 4701 ntBASIC7.2□□□□□ -1.26
MSX1P28360 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 KIT-201ENST00000288135 5186 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
MSX1P28360 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
MSX1P28360 LL22NC03-63E9.3-201ENST00000407120 3111 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
MSX1P28360 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
MSX1P28360 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
MSX1P28360 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC7.2□□□□□ -1.26
MSX1P28360 SLC9A6-214ENST00000637581 4872 ntTSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 DEFB124-201ENST00000317676 216 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
MSX1P28360 AL450124.1-201ENST00000376401 353 ntBASIC7.2□□□□□ -1.26
MSX1P28360 RNU4-31P-201ENST00000384211 141 ntBASIC7.2□□□□□ -1.26
MSX1P28360 YWHAZP6-201ENST00000399764 738 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AMD1P2-201ENST00000412936 992 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC109780.2-201ENST00000413467 845 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AL773545.3-201ENST00000414297 706 ntBASIC7.2□□□□□ -1.26
MSX1P28360 RPS6KA2-IT1-201ENST00000416770 579 ntTSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 RPA2P2-201ENST00000419698 796 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AL353729.1-201ENST00000425044 720 ntBASIC7.2□□□□□ -1.26
MSX1P28360 BLOC1S2P1-201ENST00000428431 301 ntBASIC7.2□□□□□ -1.26
MSX1P28360 HMGA1P4-201ENST00000428643 334 ntTSL 2 BASIC7.2□□□□□ -1.26
MSX1P28360 VDAC1P6-201ENST00000430062 855 ntBASIC7.2□□□□□ -1.26
MSX1P28360 OR10G8-201ENST00000431524 1045 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
MSX1P28360 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 AC019185.3-201ENST00000438805 323 ntBASIC7.2□□□□□ -1.26
MSX1P28360 TRAPPC2P8-201ENST00000440676 396 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC002553.1-201ENST00000442828 802 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC7.2□□□□□ -1.26
MSX1P28360 AL929410.2-201ENST00000451170 189 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC080129.1-201ENST00000457815 406 ntTSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 ZBTB20-AS4-201ENST00000472323 675 ntTSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 AC018639.1-201ENST00000492994 442 ntBASIC7.2□□□□□ -1.26
MSX1P28360 RN7SL869P-201ENST00000497032 300 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 AC012560.1-203ENST00000510550 595 ntTSL 4 BASIC7.2□□□□□ -1.26
MSX1P28360 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 RPL7L1P4-201ENST00000513004 707 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 AC011726.3-201ENST00000518031 568 ntTSL 4 BASIC7.2□□□□□ -1.26
MSX1P28360 CDC42P3-201ENST00000518493 633 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC087360.1-201ENST00000518788 616 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC090568.2-203ENST00000521433 579 ntTSL 4 BASIC7.2□□□□□ -1.26
MSX1P28360 AC011410.1-201ENST00000524175 705 ntTSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC7.2□□□□□ -1.26
MSX1P28360 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC7.2□□□□□ -1.26
MSX1P28360 AL512310.1-201ENST00000548639 172 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 AL512360.1-201ENST00000555346 234 ntBASIC7.2□□□□□ -1.26
MSX1P28360 CRTC3-AS1-201ENST00000558105 502 ntTSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 AC114546.2-201ENST00000560683 477 ntTSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 AC091304.5-201ENST00000568969 158 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 ARL17A-205ENST00000573185 581 ntAPPRIS ALT2 TSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 ARL17B-206ENST00000575698 581 ntTSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC7.2□□□□□ -1.26
MSX1P28360 AC097717.1-225ENST00000600829 709 ntTSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 SUGT1P3-202ENST00000604259 383 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC069499.2-201ENST00000610665 382 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AL132765.2-201ENST00000610812 351 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AL133351.5-201ENST00000612789 106 ntBASIC7.2□□□□□ -1.26
MSX1P28360 MIR6731-201ENST00000614863 72 ntBASIC7.2□□□□□ -1.26
MSX1P28360 AC104073.4-201ENST00000632111 598 ntTSL 2 BASIC7.2□□□□□ -1.26
MSX1P28360 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 PTPRR-203ENST00000378778 2632 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
MSX1P28360 CACNA1D-219ENST00000636938 6868 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 ZNF567-204ENST00000588311 2042 ntTSL 2 BASIC7.2□□□□□ -1.26
MSX1P28360 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 FCGR3A-201ENST00000367967 2086 ntAPPRIS P1 TSL 3 BASIC7.2□□□□□ -1.26
MSX1P28360 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC7.2□□□□□ -1.26
MSX1P28360 MYRFL-203ENST00000547771 3465 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
MSX1P28360 AL353753.1-201ENST00000612217 2320 ntTSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 DGKB-205ENST00000406247 3257 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC7.19□□□□□ -1.26
MSX1P28360 MAPK10-296ENST00000641283 2826 ntAPPRIS P2 BASIC7.19□□□□□ -1.26
MSX1P28360 L1TD1-201ENST00000498273 3849 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 DHX8-202ENST00000540306 3809 ntTSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 AC006141.1-201ENST00000581917 2170 ntBASIC7.19□□□□□ -1.26
MSX1P28360 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 PIK3AP1-203ENST00000371110 3151 ntTSL 2 BASIC7.19□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms