Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC007998.4-201ENST00000612496 2533 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 OR6C69P-201ENST00000394268 893 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A3P12111 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC5.57□□□□□ -1.52
COL6A3P12111 AL513548.2-201ENST00000602994 1207 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 ZNHIT6-202ENST00000431532 6080 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A3P12111 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 SIPA1L2-201ENST00000262861 6555 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A3P12111 AC092747.4-201ENST00000620519 1861 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
COL6A3P12111 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
COL6A3P12111 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 UBE2V1P14-201ENST00000415815 558 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 RCC2P2-201ENST00000422174 918 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 RPL12P20-201ENST00000475538 479 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 NIFKP7-201ENST00000503365 834 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 AC119751.5-201ENST00000514077 770 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 AC068993.1-201ENST00000546724 589 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC5.57□□□□□ -1.52
COL6A3P12111 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A3P12111 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 OR4D9-203ENST00000641962 6123 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL6A3P12111 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 KNOP1-201ENST00000219837 6432 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 GPR63-201ENST00000229955 5952 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 TXNP5-201ENST00000441043 315 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 GAPDHP25-201ENST00000447061 1001 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.56□□□□□ -1.52
COL6A3P12111 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.56□□□□□ -1.52
COL6A3P12111 HMGN2P25-201ENST00000486956 268 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 DUTP1-201ENST00000493631 470 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.56□□□□□ -1.52
COL6A3P12111 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.56□□□□□ -1.52
COL6A3P12111 AC006427.1-201ENST00000514359 712 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 SNORA74D-201ENST00000516404 141 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 OR8A2P-201ENST00000528631 952 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A3P12111 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A3P12111 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 AP003400.2-201ENST00000624036 666 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
COL6A3P12111 KIRREL1-203ENST00000368172 6870 ntTSL 2 BASIC5.56□□□□□ -1.52
COL6A3P12111 MEGF10-201ENST00000274473 7594 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 LRRC37A17P-201ENST00000570311 4693 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A3P12111 SAR1A-205ENST00000373242 5981 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
COL6A3P12111 RNU1-13P-201ENST00000384499 162 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.56□□□□□ -1.52
COL6A3P12111 AC004074.1-201ENST00000421810 1063 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 GSTM5P1-201ENST00000434751 660 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 AL672138.1-201ENST00000450604 1015 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.56□□□□□ -1.52
COL6A3P12111 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.56□□□□□ -1.52
COL6A3P12111 MTCO1P49-201ENST00000523429 802 ntBASIC5.56□□□□□ -1.52
COL6A3P12111 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.56□□□□□ -1.52
COL6A3P12111 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL6A3P12111 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 CMKLR1-202ENST00000412676 5110 ntAPPRIS ALT2 TSL 3 BASIC5.56□□□□□ -1.52
COL6A3P12111 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A3P12111 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A3P12111 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC5.56□□□□□ -1.52
COL6A3P12111 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.55□□□□□ -1.52
COL6A3P12111 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.55□□□□□ -1.52
COL6A3P12111 AC011276.1-201ENST00000469688 323 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.55□□□□□ -1.52
COL6A3P12111 RN7SKP288-201ENST00000516227 268 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A3P12111 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.55□□□□□ -1.52
COL6A3P12111 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A3P12111 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A3P12111 AC098935.2-201ENST00000604222 466 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL6A3P12111 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 GPR107-202ENST00000372406 7353 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC5.55□□□□□ -1.52
COL6A3P12111 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.55□□□□□ -1.52
COL6A3P12111 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 RN7SL339P-201ENST00000580597 296 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 KPNA2P3-201ENST00000584190 848 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 AL160281.1-201ENST00000605307 311 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 AL355974.3-201ENST00000617383 467 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 AC021106.3-201ENST00000623925 531 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms