Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXD4P09016 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXD4P09016 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 AC138907.8-201ENST00000623981 2256 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 AL359955.1-201ENST00000455242 3275 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 AC027279.4-201ENST00000624371 2072 ntBASIC5.41□□□□□ -1.54
HOXD4P09016 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXD4P09016 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
HOXD4P09016 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXD4P09016 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.4□□□□□ -1.54
HOXD4P09016 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
HOXD4P09016 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXD4P09016 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXD4P09016 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXD4P09016 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXD4P09016 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
HOXD4P09016 BIN2P1-201ENST00000504996 1530 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
HOXD4P09016 TMSB4XP2-201ENST00000335179 210 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 AL121977.1-201ENST00000401636 979 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 GTF3AP1-201ENST00000416942 1004 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HOXD4P09016 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXD4P09016 HMGN2P27-201ENST00000427352 270 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXD4P09016 AL022237.1-201ENST00000446663 358 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXD4P09016 GAPDHP14-201ENST00000450472 937 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXD4P09016 AC026348.1-201ENST00000462549 1053 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 RPSAP39-201ENST00000467439 883 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXD4P09016 RN7SL629P-201ENST00000489622 285 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXD4P09016 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
HOXD4P09016 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXD4P09016 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXD4P09016 AC112191.2-201ENST00000522428 333 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.4□□□□□ -1.54
HOXD4P09016 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.4□□□□□ -1.54
HOXD4P09016 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HOXD4P09016 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXD4P09016 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXD4P09016 AP001496.3-201ENST00000580230 913 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 AC013244.1-201ENST00000604279 193 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 AC022726.2-201ENST00000634673 547 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.4□□□□□ -1.54
HOXD4P09016 AC003992.1-201ENST00000635364 557 ntBASIC5.4□□□□□ -1.54
HOXD4P09016 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXD4P09016 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXD4P09016 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
HOXD4P09016 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
HOXD4P09016 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXD4P09016 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HOXD4P09016 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.4□□□□□ -1.55
HOXD4P09016 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.4□□□□□ -1.55
HOXD4P09016 AC020656.2-201ENST00000613291 5309 ntBASIC5.4□□□□□ -1.55
HOXD4P09016 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
HOXD4P09016 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
HOXD4P09016 AC106872.5-201ENST00000508856 1416 ntBASIC5.4□□□□□ -1.55
HOXD4P09016 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
HOXD4P09016 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
HOXD4P09016 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXD4P09016 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HOXD4P09016 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HOXD4P09016 U3.25-201ENST00000391209 220 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 RPL35AP3-201ENST00000414680 288 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXD4P09016 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXD4P09016 AL121878.1-201ENST00000418638 859 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXD4P09016 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC064862.4-201ENST00000442180 334 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 RPL36AP39-201ENST00000445859 318 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 MYO5BP2-201ENST00000449815 1277 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 RPL7L1P3-201ENST00000455249 689 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC110749.1-201ENST00000462007 357 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 RN7SL352P-201ENST00000466002 277 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXD4P09016 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXD4P09016 RPSAP37-201ENST00000470913 821 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 UBFD1P1-201ENST00000473259 814 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC099521.1-201ENST00000482557 334 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 RPL23AP40-201ENST00000487630 390 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC008638.1-201ENST00000506035 866 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXD4P09016 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXD4P09016 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms