Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL3A1P02461 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL3A1P02461 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL3A1P02461 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC7.31□□□□□ -1.24
COL3A1P02461 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC7.31□□□□□ -1.24
COL3A1P02461 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC7.31□□□□□ -1.24
COL3A1P02461 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
COL3A1P02461 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL3A1P02461 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL3A1P02461 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
COL3A1P02461 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
COL3A1P02461 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL3A1P02461 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL3A1P02461 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL3A1P02461 MAPK10-304ENST00000641341 3984 ntBASIC7.31□□□□□ -1.24
COL3A1P02461 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL3A1P02461 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC7.3□□□□□ -1.24
COL3A1P02461 RN7SKP278-201ENST00000410504 342 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 RIMKLBP2-201ENST00000424737 654 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AL672138.1-201ENST00000450604 1015 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 EIF2S2P5-201ENST00000457635 968 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 RN7SL629P-201ENST00000489622 285 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AC006499.3-201ENST00000506077 748 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC7.3□□□□□ -1.24
COL3A1P02461 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC7.3□□□□□ -1.24
COL3A1P02461 SEPT10P1-201ENST00000517342 1162 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC7.3□□□□□ -1.24
COL3A1P02461 RPL10P14-201ENST00000565265 298 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 SUMO2P15-201ENST00000604285 278 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AC144521.1-201ENST00000607148 956 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AC090527.3-201ENST00000619041 548 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AC018445.2-201ENST00000622987 260 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL3A1P02461 CASC19-264ENST00000641912 1184 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL3A1P02461 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC7.3□□□□□ -1.24
COL3A1P02461 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL3A1P02461 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
COL3A1P02461 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL3A1P02461 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL3A1P02461 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC7.3□□□□□ -1.24
COL3A1P02461 AL590763.1-201ENST00000398297 1545 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL3A1P02461 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL3A1P02461 AC007114.2-201ENST00000576014 4281 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC7.3□□□□□ -1.24
COL3A1P02461 RNA5SP319-201ENST00000362768 119 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL3A1P02461 MIR551A-201ENST00000385042 96 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC7.3□□□□□ -1.24
COL3A1P02461 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC7.3□□□□□ -1.24
COL3A1P02461 AC105399.1-202ENST00000447303 205 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC7.3□□□□□ -1.24
COL3A1P02461 AC074386.1-201ENST00000476560 767 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AC008953.1-201ENST00000497334 318 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC7.3□□□□□ -1.24
COL3A1P02461 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC7.3□□□□□ -1.24
COL3A1P02461 RNU6-941P-201ENST00000516346 108 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC7.3□□□□□ -1.24
COL3A1P02461 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC7.3□□□□□ -1.24
COL3A1P02461 OR4A46P-201ENST00000527255 933 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 ASB8-215ENST00000540782 659 ntTSL 3 BASIC7.3□□□□□ -1.24
COL3A1P02461 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
COL3A1P02461 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC7.3□□□□□ -1.24
COL3A1P02461 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC7.3□□□□□ -1.24
COL3A1P02461 AC106730.2-201ENST00000566641 540 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC7.3□□□□□ -1.24
COL3A1P02461 IGLCOR22-2-201ENST00000605398 313 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 MTCO1P1-201ENST00000624263 1081 ntBASIC7.3□□□□□ -1.24
COL3A1P02461 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC7.3□□□□□ -1.24
COL3A1P02461 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC7.3□□□□□ -1.24
COL3A1P02461 NEK3-211ENST00000629912 141 ntTSL 5 BASIC7.3□□□□□ -1.24
COL3A1P02461 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL3A1P02461 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC7.29□□□□□ -1.24
COL3A1P02461 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL3A1P02461 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC7.29□□□□□ -1.24
COL3A1P02461 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.24
COL3A1P02461 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC7.29□□□□□ -1.24
COL3A1P02461 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
COL3A1P02461 AC107980.1-201ENST00000558671 3355 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC7.29□□□□□ -1.24
COL3A1P02461 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL3A1P02461 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC7.29□□□□□ -1.24
COL3A1P02461 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC7.29□□□□□ -1.24
COL3A1P02461 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL3A1P02461 AC100757.1-201ENST00000616872 1835 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
COL3A1P02461 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC7.29□□□□□ -1.24
COL3A1P02461 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL3A1P02461 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC7.29□□□□□ -1.24
COL3A1P02461 SNORD56.6-201ENST00000384569 71 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
COL3A1P02461 AL009179.1-201ENST00000406085 265 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC7.29□□□□□ -1.24
COL3A1P02461 PPP2R2DP1-201ENST00000420526 637 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL3A1P02461 ELOCP6-201ENST00000429066 328 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC7.29□□□□□ -1.24
COL3A1P02461 ELOCP12-201ENST00000458706 328 ntBASIC7.29□□□□□ -1.24
COL3A1P02461 NPM1P28-201ENST00000492269 840 ntBASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms