Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
USP42Q9H9J4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
USP42Q9H9J4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC25.06■■□□□ 1.6
USP42Q9H9J4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC25.06■■□□□ 1.6
USP42Q9H9J4 AC128688.1-201ENST00000487626 519 ntBASIC25.06■■□□□ 1.6
USP42Q9H9J4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC25.06■■□□□ 1.6
USP42Q9H9J4 AL358472.4-201ENST00000633140 710 ntBASIC25.06■■□□□ 1.6
USP42Q9H9J4 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
USP42Q9H9J4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC25.06■■□□□ 1.6
USP42Q9H9J4 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USP42Q9H9J4 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
USP42Q9H9J4 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USP42Q9H9J4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC25.05■■□□□ 1.6
USP42Q9H9J4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
USP42Q9H9J4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
USP42Q9H9J4 AC117947.1-201ENST00000427448 529 ntBASIC25.05■■□□□ 1.6
USP42Q9H9J4 YBX1P10-201ENST00000444752 975 ntBASIC25.05■■□□□ 1.6
USP42Q9H9J4 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC25.05■■□□□ 1.6
USP42Q9H9J4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC25.05■■□□□ 1.6
USP42Q9H9J4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC25.05■■□□□ 1.6
USP42Q9H9J4 KRT18P16-201ENST00000510337 1294 ntBASIC25.05■■□□□ 1.6
USP42Q9H9J4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
USP42Q9H9J4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC25.05■■□□□ 1.6
USP42Q9H9J4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USP42Q9H9J4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
USP42Q9H9J4 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
USP42Q9H9J4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
USP42Q9H9J4 AC116351.2-201ENST00000606540 1585 ntBASIC25.04■■□□□ 1.6
USP42Q9H9J4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC25.04■■□□□ 1.6
USP42Q9H9J4 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
USP42Q9H9J4 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
USP42Q9H9J4 UPK3BP1-201ENST00000428678 509 ntBASIC25.04■■□□□ 1.6
USP42Q9H9J4 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
USP42Q9H9J4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC25.04■■□□□ 1.6
USP42Q9H9J4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
USP42Q9H9J4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
USP42Q9H9J4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
USP42Q9H9J4 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC25.03■■□□□ 1.6
USP42Q9H9J4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC25.03■■□□□ 1.6
USP42Q9H9J4 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC25.03■■□□□ 1.6
USP42Q9H9J4 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC25.03■■□□□ 1.6
USP42Q9H9J4 FEM1AP1-201ENST00000431297 1995 ntBASIC25.03■■□□□ 1.6
USP42Q9H9J4 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
USP42Q9H9J4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 AP005212.1-201ENST00000581547 1997 ntBASIC25.03■■□□□ 1.6
USP42Q9H9J4 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
USP42Q9H9J4 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP42Q9H9J4 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP42Q9H9J4 FP700111.2-201ENST00000619190 1892 ntBASIC25.02■■□□□ 1.6
USP42Q9H9J4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP42Q9H9J4 TFP1-202ENST00000475455 1573 ntBASIC25.02■■□□□ 1.6
USP42Q9H9J4 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP42Q9H9J4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP42Q9H9J4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
USP42Q9H9J4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP42Q9H9J4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
USP42Q9H9J4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC25.02■■□□□ 1.6
USP42Q9H9J4 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC25.02■■□□□ 1.6
USP42Q9H9J4 NMU-205ENST00000511469 756 ntTSL 3 BASIC25.02■■□□□ 1.6
USP42Q9H9J4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC25.02■■□□□ 1.6
USP42Q9H9J4 AC091076.1-201ENST00000610741 619 ntBASIC25.02■■□□□ 1.6
USP42Q9H9J4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP42Q9H9J4 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC25.02■■□□□ 1.6
USP42Q9H9J4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC25.02■■□□□ 1.6
USP42Q9H9J4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC25.02■■□□□ 1.6
USP42Q9H9J4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC25.01■■□□□ 1.59
USP42Q9H9J4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC25.01■■□□□ 1.59
USP42Q9H9J4 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP42Q9H9J4 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
USP42Q9H9J4 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP42Q9H9J4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC25.01■■□□□ 1.59
USP42Q9H9J4 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP42Q9H9J4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP42Q9H9J4 FAM8A6P-201ENST00000407496 1135 ntBASIC25.01■■□□□ 1.59
USP42Q9H9J4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP42Q9H9J4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
USP42Q9H9J4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC25.01■■□□□ 1.59
USP42Q9H9J4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC25.01■■□□□ 1.59
USP42Q9H9J4 AC131212.4-201ENST00000623606 975 ntBASIC25.01■■□□□ 1.59
USP42Q9H9J4 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
USP42Q9H9J4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
USP42Q9H9J4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
USP42Q9H9J4 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC25.01■■□□□ 1.59
USP42Q9H9J4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP42Q9H9J4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
USP42Q9H9J4 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC25■■□□□ 1.59
USP42Q9H9J4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC25■■□□□ 1.59
USP42Q9H9J4 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
USP42Q9H9J4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC25■■□□□ 1.59
USP42Q9H9J4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
USP42Q9H9J4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms