Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 NBPF21P-201ENST00000425093 1451 ntBASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 UBE2SP1-201ENST00000450587 669 ntBASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 AC133681.1-201ENST00000465482 601 ntBASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 TFP1-202ENST00000475455 1573 ntBASIC18.55■□□□□ 0.56
PTCHD1Q96NR3 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PTCHD1Q96NR3 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 AP006294.2-201ENST00000641667 209 ntBASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 AP006587.1-201ENST00000534129 1502 ntBASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD1Q96NR3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD1Q96NR3 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms