Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 AL512625.2-201ENST00000417533 625 ntBASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLHC1Q8NHS4 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 MIR663A-201ENST00000385250 93 ntBASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 CDCA4P2-201ENST00000441182 718 ntBASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 AC105036.2-201ENST00000569468 176 ntBASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.85■□□□□ 0.61
CLHC1Q8NHS4 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 AC023632.3-201ENST00000521633 145 ntBASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 MKRN4P-201ENST00000444706 1521 ntBASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLHC1Q8NHS4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 AL020996.1-203ENST00000536896 2307 ntBASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CLHC1Q8NHS4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 AC133552.2-202ENST00000575694 574 ntBASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms