Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC090164.3-201ENST00000610780 2143 ntBASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 AC239859.2-201ENST00000444165 318 ntBASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 MTDHP2-201ENST00000601468 714 ntBASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 MIR4787-201ENST00000607364 84 ntBASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 MIR6722-201ENST00000617286 78 ntBASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28AQ8IWP9 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 LINC01126-201ENST00000623515 1646 ntBASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 AC092028.1-203ENST00000608262 953 ntBASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28AQ8IWP9 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 SENP5-202ENST00000419026 973 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28AQ8IWP9 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.22
CCDC28AQ8IWP9 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CCDC28AQ8IWP9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.39■□□□□ 0.22
CCDC28AQ8IWP9 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
CCDC28AQ8IWP9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC28AQ8IWP9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms