Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC144BQ3MJ40 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 PENK-204ENST00000518770 863 ntTSL 2 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
CCDC144BQ3MJ40 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
CCDC144BQ3MJ40 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.24
CCDC144BQ3MJ40 FP700111.2-201ENST00000619190 1892 ntBASIC22.83■■□□□ 1.24
CCDC144BQ3MJ40 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC22.83■■□□□ 1.24
CCDC144BQ3MJ40 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.24
CCDC144BQ3MJ40 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 KRT18P21-201ENST00000515767 1272 ntBASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 AL355075.4-201ENST00000554988 638 ntBASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC22.82■■□□□ 1.24
CCDC144BQ3MJ40 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
CCDC144BQ3MJ40 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 AC087499.1-201ENST00000418141 1075 ntBASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 SNX21-213ENST00000614929 587 ntTSL 5 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 AC133561.5-201ENST00000635547 218 ntBASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms